Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RBI11_RS09955 Genome accession   NZ_CP133052
Coordinates   2081647..2082120 (+) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain A1014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2076647..2087120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS09930 (RBI11_09955) - 2077109..2079214 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RBI11_RS09935 (RBI11_09960) - 2079255..2079385 (-) 131 Protein_1928 hypothetical protein -
  RBI11_RS09940 (RBI11_09965) rpoZ 2079424..2079702 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RBI11_RS09945 (RBI11_09970) gmk 2079775..2080404 (-) 630 WP_000015937.1 guanylate kinase -
  RBI11_RS09950 (RBI11_09975) ispH 2080527..2081477 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBI11_RS09955 (RBI11_09980) fimU 2081647..2082120 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBI11_RS09960 (RBI11_09985) pilV 2082114..2082674 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RBI11_RS09965 (RBI11_09990) pilW 2082675..2083676 (+) 1002 WP_057093627.1 PilW family protein Machinery gene
  RBI11_RS09970 (RBI11_09995) pilX 2083673..2084491 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=871509 RBI11_RS09955 WP_001214059.1 2081647..2082120(+) (fimU) [Acinetobacter baumannii strain A1014]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=871509 RBI11_RS09955 WP_001214059.1 2081647..2082120(+) (fimU) [Acinetobacter baumannii strain A1014]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACTCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994