Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RBI11_RS09960 Genome accession   NZ_CP133052
Coordinates   2082114..2082674 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A1014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2077114..2087674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS09935 (RBI11_09960) - 2079255..2079385 (-) 131 Protein_1928 hypothetical protein -
  RBI11_RS09940 (RBI11_09965) rpoZ 2079424..2079702 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RBI11_RS09945 (RBI11_09970) gmk 2079775..2080404 (-) 630 WP_000015937.1 guanylate kinase -
  RBI11_RS09950 (RBI11_09975) ispH 2080527..2081477 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBI11_RS09955 (RBI11_09980) fimU 2081647..2082120 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBI11_RS09960 (RBI11_09985) pilV 2082114..2082674 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RBI11_RS09965 (RBI11_09990) pilW 2082675..2083676 (+) 1002 WP_057093627.1 PilW family protein Machinery gene
  RBI11_RS09970 (RBI11_09995) pilX 2083673..2084491 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=871510 RBI11_RS09960 WP_002194578.1 2082114..2082674(+) (pilV) [Acinetobacter baumannii strain A1014]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=871510 RBI11_RS09960 WP_002194578.1 2082114..2082674(+) (pilV) [Acinetobacter baumannii strain A1014]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAACTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGTCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414