Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RBI11_RS09965 Genome accession   NZ_CP133052
Coordinates   2082675..2083676 (+) Length   333 a.a.
NCBI ID   WP_057093627.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A1014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2077675..2088676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS09935 (RBI11_09960) - 2079255..2079385 (-) 131 Protein_1928 hypothetical protein -
  RBI11_RS09940 (RBI11_09965) rpoZ 2079424..2079702 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RBI11_RS09945 (RBI11_09970) gmk 2079775..2080404 (-) 630 WP_000015937.1 guanylate kinase -
  RBI11_RS09950 (RBI11_09975) ispH 2080527..2081477 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBI11_RS09955 (RBI11_09980) fimU 2081647..2082120 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBI11_RS09960 (RBI11_09985) pilV 2082114..2082674 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RBI11_RS09965 (RBI11_09990) pilW 2082675..2083676 (+) 1002 WP_057093627.1 PilW family protein Machinery gene
  RBI11_RS09970 (RBI11_09995) pilX 2083673..2084491 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RBI11_RS09975 (RBI11_10000) pilY1 2084503..2088357 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35831.51 Da        Isoelectric Point: 6.1010

>NTDB_id=871511 RBI11_RS09965 WP_057093627.1 2082675..2083676(+) (pilW) [Acinetobacter baumannii strain A1014]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWRGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=871511 RBI11_RS09965 WP_057093627.1 2082675..2083676(+) (pilW) [Acinetobacter baumannii strain A1014]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAGAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997