Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RBI10_RS16670 Genome accession   NZ_CP133047
Coordinates   3508705..3510192 (+) Length   495 a.a.
NCBI ID   WP_069119391.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1269     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3503705..3515192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS16645 (RBI10_16690) ribD 3504625..3505710 (-) 1086 WP_032070645.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  RBI10_RS16650 (RBI10_16695) nrdR 3505726..3506184 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  RBI10_RS16655 (RBI10_16700) amtB 3506343..3507737 (-) 1395 WP_005079483.1 ammonium transporter -
  RBI10_RS16660 (RBI10_16705) glnK 3507795..3508133 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  RBI10_RS16665 (RBI10_16710) - 3508412..3508639 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  RBI10_RS16670 (RBI10_16715) comM 3508705..3510192 (+) 1488 WP_069119391.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RBI10_RS16675 (RBI10_16720) yieF 3510296..3510841 (+) 546 WP_005065691.1 NADPH-dependent FMN reductase -
  RBI10_RS16680 (RBI10_16725) mocR 3510866..3512299 (-) 1434 WP_005065689.1 PLP-dependent aminotransferase family protein -
  RBI10_RS16685 (RBI10_16730) - 3512411..3513187 (+) 777 WP_005065687.1 aldolase -
  RBI10_RS16690 (RBI10_16735) - 3513203..3514081 (+) 879 WP_005065685.1 dihydrodipicolinate synthase family protein -
  RBI10_RS16695 (RBI10_16740) - 3514123..3514935 (-) 813 WP_002121202.1 TorF family putative porin -
  RBI10_RS16700 (RBI10_16745) - 3514974..3515162 (-) 189 WP_002121272.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54511.62 Da        Isoelectric Point: 7.5363

>NTDB_id=871473 RBI10_RS16670 WP_069119391.1 3508705..3510192(+) (comM) [Acinetobacter pittii strain A1269]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASDQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGMKSLSSIEPAATSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=871473 RBI10_RS16670 WP_069119391.1 3508705..3510192(+) (comM) [Acinetobacter pittii strain A1269]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA
GGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCAGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCTATTA
TTAATAGTGGATTTCAATTTCCAACTAAAAGATTGACCATTAATCTTGCACCAGCTGATCTGCCCAAAGATGGGTCACGC
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGACCAACTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGACCAGTGTCAGGTACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAGCGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCATTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCTCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGGGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACCTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATTAAGCGCTATCAAAACCGTATATCAGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

49.9

100

0.503
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.726

100

0.465