Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RA164_RS15855 Genome accession   NZ_CP132911
Coordinates   3552457..3553956 (-) Length   499 a.a.
NCBI ID   WP_329741805.1    Uniprot ID   -
Organism   Dyella aluminiiresistens strain A6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3547457..3558956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA164_RS15840 - 3548978..3549277 (-) 300 WP_329741802.1 hypothetical protein -
  RA164_RS15845 - 3549476..3550300 (-) 825 WP_329741803.1 SAM-dependent methyltransferase -
  RA164_RS15850 - 3550422..3552209 (-) 1788 WP_329741804.1 sodium:proton antiporter -
  RA164_RS15855 comM 3552457..3553956 (-) 1500 WP_329741805.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RA164_RS15860 - 3554098..3554355 (-) 258 WP_329741806.1 accessory factor UbiK family protein -
  RA164_RS15865 glnK 3554540..3554878 (+) 339 WP_329741807.1 P-II family nitrogen regulator -
  RA164_RS15870 - 3554899..3555441 (-) 543 WP_329741808.1 DUF1453 domain-containing protein -
  RA164_RS15875 gpmA 3555564..3556307 (-) 744 WP_329741809.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RA164_RS15880 - 3556454..3557104 (+) 651 WP_329741810.1 hypothetical protein -
  RA164_RS15885 hemF 3557204..3558136 (-) 933 WP_329741811.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53499.28 Da        Isoelectric Point: 7.8675

>NTDB_id=870602 RA164_RS15855 WP_329741805.1 3552457..3553956(-) (comM) [Dyella aluminiiresistens strain A6]
MSLAVTLSRAQEGVSAPQVMVEVHLSGGLPGTSIVGLPEAAVREARDRVRVAIQNTAFEYPSRKVTVNLAPAELPKDGGR
FDLAIALGILAAGHQVPRERLDDCEFLGELALSGELRGVSGVLPALLRARARRRRVVVPRANAAEAALVSDADVRVADSL
AEVCGWLRGAQDLASPAQTGACDDAGSGPDLIDVRGQLQARRALEIAATGGHHLLMSGPPGTGKTMLAERLPGILPPLTE
SEALETCAVLSVAGQPVDPMHWRRRPFRSPHHTASAVALVGGGSQPRPGEISLAHNGVLFLDELPEFSRHVLDVLREPLE
SGSIVISRASRQATFPAQFQLVAAMNPCPCGYAGDARGRCHCTPDQIARYLARISGPLLDRIDLCVDVPRVPLAELGAPR
SIHDEDSATVRVRVVQARHHALMRAGRPNAEITTRELERDCALGAAERRWFEAALERLGLSARAYHRILRVARTIADLDG
GVAALDRKHLAEAMQYRRL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=870602 RA164_RS15855 WP_329741805.1 3552457..3553956(-) (comM) [Dyella aluminiiresistens strain A6]
ATGAGCCTGGCCGTAACCCTCAGTCGTGCCCAGGAAGGGGTCTCCGCACCCCAGGTGATGGTCGAGGTGCACCTGTCTGG
CGGCCTGCCGGGCACCAGTATCGTCGGTCTGCCGGAAGCCGCGGTGCGCGAGGCCCGTGATCGCGTGCGCGTCGCCATCC
AGAATACGGCGTTCGAGTATCCAAGCCGCAAGGTCACCGTGAATCTCGCGCCTGCGGAGTTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATTGCACTGGGCATCCTGGCGGCAGGTCACCAGGTGCCGCGCGAGCGGCTGGATGACTGCGAATTCCT
GGGTGAGCTGGCCCTGTCCGGCGAGCTGCGCGGCGTTTCCGGCGTGCTGCCTGCGCTGCTGCGCGCGCGCGCGCGTCGGC
GACGGGTCGTGGTGCCGCGTGCCAACGCGGCCGAGGCGGCGCTGGTGAGCGATGCCGATGTGCGTGTCGCCGACAGCCTG
GCCGAGGTCTGCGGCTGGCTGCGCGGTGCGCAGGACCTGGCTTCGCCGGCGCAGACGGGGGCCTGCGACGATGCCGGTTC
CGGGCCGGACCTGATCGATGTGCGTGGTCAGTTGCAGGCGCGCCGCGCGCTGGAGATCGCGGCGACCGGGGGGCATCACC
TGCTCATGTCCGGGCCGCCCGGCACGGGCAAGACCATGCTCGCGGAACGCCTGCCCGGCATCCTGCCGCCGCTGACCGAG
TCCGAGGCGCTGGAAACCTGTGCCGTGTTGTCCGTGGCCGGGCAGCCGGTCGATCCGATGCACTGGCGTCGCCGTCCGTT
TCGTTCGCCGCACCACACCGCGTCGGCGGTCGCCCTGGTCGGCGGCGGCTCGCAGCCCCGGCCGGGCGAAATCTCGCTGG
CGCACAACGGGGTGTTGTTCCTCGACGAGCTGCCGGAATTCAGCCGGCATGTGCTCGACGTACTGCGCGAGCCGCTGGAG
TCCGGCAGTATCGTTATCTCCCGGGCGTCCCGGCAGGCCACCTTTCCCGCGCAGTTCCAGCTGGTCGCCGCGATGAATCC
CTGTCCCTGCGGCTATGCCGGCGACGCGCGCGGGCGCTGCCATTGCACGCCGGACCAGATCGCCCGCTACCTGGCGCGGA
TCTCCGGTCCGCTGCTGGACCGGATCGATCTCTGTGTCGACGTGCCGCGTGTTCCGCTGGCTGAGCTGGGCGCACCCAGG
AGCATCCATGACGAGGACTCGGCGACCGTACGCGTACGCGTCGTGCAGGCGCGGCACCATGCATTGATGCGTGCGGGGCG
GCCGAATGCCGAAATCACGACTCGTGAACTGGAGCGCGATTGTGCCCTCGGTGCGGCCGAGCGCCGCTGGTTCGAAGCGG
CGCTGGAGCGGCTCGGGCTGTCCGCGCGGGCCTATCACCGGATTCTGCGGGTGGCCCGCACGATCGCCGATCTCGACGGC
GGCGTGGCTGCACTTGACCGCAAGCATCTGGCCGAGGCCATGCAATACCGCCGGCTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.711

100

0.557
  comM Vibrio campbellii strain DS40M4

54.291

100

0.545
  comM Glaesserella parasuis strain SC1401

53.693

100

0.539
  comM Haemophilus influenzae Rd KW20

53.479

100

0.539
  comM Legionella pneumophila str. Paris

51.004

99.8

0.509
  comM Legionella pneumophila strain ERS1305867

51.004

99.8

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.711

100

0.449