Detailed information NTG0870589

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RA164_RS03495
• Genome accession: NZ_CP132911
• Coordinates: 857325..858491 (+)
• Length: 388 a.a.
• NCBI ID: WP_329742591.1
• Uniprot ID: -
• Organism: Dyella aluminiiresistens strain A6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 852325..863491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA164_RS03475	-	853258..854322 (-)	1065	WP_329742306.1	IS30 family transposase	-
RA164_RS03480	-	854568..855143 (-)	576	WP_329742588.1	YggT family protein	-
RA164_RS03485	proC	855140..855967 (-)	828	WP_329742589.1	pyrroline-5-carboxylate reductase	-
RA164_RS03490	pilT	856248..857285 (+)	1038	WP_329742590.1	type IV pilus twitching motility protein PilT	Machinery gene
RA164_RS03495	pilU	857325..858491 (+)	1167	WP_329742591.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RA164_RS03500	-	858663..860390 (-)	1728	WP_329742592.1	hypothetical protein	-
RA164_RS03505	-	860486..861412 (-)	927	WP_329742593.1	aspartate carbamoyltransferase catalytic subunit	-
RA164_RS03510	ruvX	861409..861867 (-)	459	WP_329742594.1	Holliday junction resolvase RuvX	-
RA164_RS03515	-	861878..862447 (-)	570	WP_329742595.1	YqgE/AlgH family protein	-
RA164_RS03520	-	862532..863398 (-)	867	WP_329742596.1	energy transducer TonB	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 43390.74 Da
• Isoelectric Point: 7.0926

>NTDB_id=870589 RA164_RS03495 WP_329742591.1 857325..858491(+) (pilU) [Dyella aluminiiresistens strain A6]
MSEFDFTSFLKLMVHKKASDLFITAGLPPSIKVQGRIVPITQSPLSPQQARDMVVNVMTPSQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNYVGMVLRRIESKIPSVDELGLPPVIKQLAMTKRGIIIFVGATGTGKSTSLAAMVGYRNGNSTGHIIT
IEDPIEYVHKHQGCIITQREVGIDTDSWENALKNTLRQAPDVILIGEVRTRETMEYAINFAETGHLCLCTLHANNANQAI
DRILHFFPEDRRQQLFMDLSLNLRGIVAQQLIPTPDGKARRVAMEVMLGTPLVQDYIRQGEIHKLKEVMRESTNLGMVTF
DQSLVQLYHAGEISYEDALRHADSANEVRLRIKLAQGGDAHTLSQGLEGVEVEQTNDNRTFGGGMLNR

Nucleotide

• Length: 1167 bp

>NTDB_id=870589 RA164_RS03495 WP_329742591.1 857325..858491(+) (pilU) [Dyella aluminiiresistens strain A6]
ATGAGCGAATTTGACTTCACCTCGTTCCTGAAACTGATGGTGCACAAGAAGGCGTCGGACCTTTTCATCACGGCCGGCCT
GCCGCCGTCGATCAAGGTGCAGGGGCGCATCGTGCCGATCACGCAGAGTCCGTTGTCGCCGCAGCAGGCGCGCGACATGG
TGGTCAACGTGATGACGCCTAGCCAGCGCGAGGAGTTCGAAAAGACCCACGAGTGCCAGTTCGCGATTTCCGCGCAGGGT
GTGGGCCGGTTCCGCGTGTCCTGCTTCTACCAGCGCAACTATGTGGGCATGGTGCTGCGCCGGATCGAATCGAAGATTCC
TTCCGTCGACGAGCTGGGCCTGCCGCCGGTGATCAAGCAACTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGTG
CCACCGGCACCGGTAAGTCCACCTCGCTGGCGGCGATGGTGGGCTATCGCAACGGCAACTCGACCGGTCACATCATCACC
ATCGAGGACCCGATCGAATACGTGCACAAGCACCAGGGCTGCATCATCACCCAGCGCGAAGTCGGCATCGACACCGACAG
CTGGGAGAACGCGCTGAAGAATACTTTGCGCCAGGCGCCCGACGTGATCCTGATCGGCGAGGTGCGCACGCGCGAGACGA
TGGAGTACGCCATCAACTTCGCCGAAACCGGTCACCTGTGCCTGTGCACCCTGCATGCGAACAACGCCAACCAGGCGATC
GACCGCATACTGCACTTCTTCCCCGAAGACCGGCGCCAGCAGCTGTTCATGGATCTGTCGCTGAACCTGCGCGGCATCGT
GGCGCAGCAGCTGATTCCCACGCCCGACGGCAAGGCGCGCCGGGTGGCGATGGAAGTGATGCTGGGTACGCCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATACACAAGCTGAAGGAGGTCATGCGCGAGTCCACCAACCTCGGCATGGTGACCTTC
GACCAGAGCCTGGTGCAGCTTTATCACGCGGGCGAGATCAGTTACGAGGATGCGCTGCGGCATGCGGACAGCGCCAACGA
GGTGCGGCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCGCACACCCTGTCGCAGGGGCTGGAAGGCGTGGAAGTGGAAC
AGACCAACGACAACCGCACCTTCGGCGGCGGCATGCTGAACCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (43-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	65.263	97.938	0.639
pilU	Acinetobacter baylyi ADP1	63.202	91.753	0.58
pilU	Vibrio cholerae strain A1552	53.371	91.753	0.49
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.935	87.887	0.369