Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RA167_RS01505 Genome accession   NZ_CP132744
Coordinates   350856..352388 (-) Length   510 a.a.
NCBI ID   WP_076786002.1    Uniprot ID   -
Organism   Mycetohabitans endofungorum strain B13/HKI 0402     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 345856..357388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA167_RS01480 (RA167_01490) - 346893..347219 (+) 327 WP_076787622.1 DUF2917 domain-containing protein -
  RA167_RS01485 (RA167_01495) lipB 347322..348020 (+) 699 WP_076787626.1 lipoyl(octanoyl) transferase LipB -
  RA167_RS01490 (RA167_01500) lipA 348055..349068 (+) 1014 WP_076787624.1 lipoyl synthase -
  RA167_RS01495 (RA167_01505) - 349160..349675 (-) 516 WP_076787629.1 TlpA disulfide reductase family protein -
  RA167_RS01500 (RA167_01510) - 349961..350422 (+) 462 WP_237574367.1 hypothetical protein -
  RA167_RS01505 (RA167_01515) comM 350856..352388 (-) 1533 WP_076786002.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RA167_RS01510 (RA167_01520) - 352443..352700 (-) 258 WP_076786003.1 accessory factor UbiK family protein -
  RA167_RS01515 (RA167_01525) - 353096..353434 (+) 339 WP_076786004.1 P-II family nitrogen regulator -
  RA167_RS01520 (RA167_01530) - 353506..355008 (+) 1503 WP_076786005.1 ammonium transporter -
  RA167_RS01525 (RA167_01535) gshA 355387..356676 (+) 1290 WP_076786006.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54041.19 Da        Isoelectric Point: 8.1012

>NTDB_id=870457 RA167_RS01505 WP_076786002.1 350856..352388(-) (comM) [Mycetohabitans endofungorum strain B13/HKI 0402]
MSLAVVRSRAPLHALAPEVTVEVHLANGLPSFAIVGLPDLEVRESRERVRAALAHCGFDVPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPCNALTGREFAGELSLSGTLRPVRGAFAMACGTARQAGPDAAYPELYVPLDNAAEAALAPGVAV
YGAADLATLVAHLKGEPEARIERAQPSGVALPAQPAPDMADVIGQPAARRALEIAAAGSHHMLMVGPPGAGKSMLAQRLP
GILPPMSDDDALACAMLRSASGRGFTAADWRRRPFRAPHHSASAAALVGGYNPPRPGEITLAHLGVLFLDELPEFSRAVL
ETLREPLETGKITISRAAAQTDFPAACQLVAAMNPCPCGLRGDPLGRCRCTPDQIARYVGRLSGPLLDRIDIVIDVPSLS
AAELARRTGARGEASHVIAARVRRARERQLARQHKANCALNAEDLNRWCPLDPRSEALLQICGERLGWSGRAFDKVRRVA
RTIADLDLSDDVLAVHVGEAVQYRRASITV

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=870457 RA167_RS01505 WP_076786002.1 350856..352388(-) (comM) [Mycetohabitans endofungorum strain B13/HKI 0402]
ATGTCGCTAGCCGTGGTCCGCAGCCGCGCGCCGTTGCACGCGCTCGCGCCCGAAGTCACTGTCGAAGTCCATTTGGCGAA
CGGCCTGCCGTCGTTTGCGATCGTCGGGCTGCCTGACCTGGAAGTGCGTGAGAGCCGGGAGCGGGTGCGGGCCGCATTGG
CCCATTGCGGTTTCGACGTGCCCGTGCGGCGAATCACCGTCAATCTGGCCCCGGCGGACTTACCGAAGGAATCCGGGCGC
TTCGATTTGCCGATCGCACTGGGCATCCTGGCCGCGAGCGGGCAATTGCCGTGCAATGCACTGACCGGCCGCGAATTCGC
CGGCGAATTATCGCTCAGCGGCACGCTGCGGCCGGTCCGGGGTGCGTTCGCGATGGCGTGCGGCACCGCGAGACAGGCTG
GGCCCGACGCGGCGTACCCGGAACTGTACGTGCCGTTGGACAATGCGGCGGAAGCCGCGCTGGCGCCAGGCGTGGCCGTG
TACGGAGCTGCCGACCTGGCCACGCTCGTCGCGCATCTGAAAGGCGAGCCCGAGGCTCGCATCGAGCGCGCGCAGCCGAG
CGGCGTCGCCCTACCCGCACAACCCGCACCGGATATGGCTGATGTGATCGGCCAACCTGCCGCGCGCCGGGCGCTGGAGA
TCGCTGCCGCCGGCTCGCATCACATGTTGATGGTGGGACCGCCCGGCGCCGGCAAGTCGATGCTGGCGCAACGTCTGCCG
GGCATACTGCCACCGATGTCGGACGACGACGCACTGGCCTGTGCAATGCTGCGGTCCGCCAGCGGCCGTGGCTTCACGGC
GGCAGACTGGCGGCGCCGTCCGTTTCGCGCGCCGCATCATAGTGCGAGCGCCGCCGCGCTGGTCGGCGGCTACAACCCGC
CACGGCCCGGCGAAATCACACTAGCGCACCTGGGCGTACTGTTCCTCGATGAGCTGCCCGAGTTCAGCCGCGCGGTGCTG
GAGACCCTTCGCGAGCCGCTCGAAACGGGCAAGATCACGATTTCTCGGGCAGCTGCGCAAACCGACTTTCCCGCCGCATG
TCAACTGGTTGCCGCGATGAACCCGTGCCCTTGCGGCTTGCGCGGCGATCCGCTAGGACGGTGCCGATGCACGCCCGATC
AGATCGCCCGCTATGTCGGCAGGCTGTCTGGACCACTGCTCGATCGGATCGACATCGTCATCGACGTGCCTTCGCTGTCG
GCCGCCGAGCTTGCCCGCCGCACCGGCGCGCGCGGCGAAGCGAGCCACGTGATCGCGGCGCGTGTGCGGCGCGCGCGCGA
ACGTCAATTGGCACGCCAGCATAAGGCCAATTGCGCGTTGAATGCTGAGGACCTCAACCGCTGGTGCCCACTCGATCCGC
GCAGCGAAGCGTTACTGCAAATCTGCGGCGAGCGCCTGGGGTGGTCGGGGCGTGCCTTCGACAAGGTACGCCGCGTTGCG
CGCACCATCGCCGACCTTGATCTGAGCGATGACGTACTCGCTGTCCACGTCGGCGAGGCGGTGCAATACCGGCGCGCGTC
GATCACGGTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.112

99.412

0.488
  comM Haemophilus influenzae Rd KW20

48.221

99.216

0.478
  comM Vibrio campbellii strain DS40M4

48.016

98.824

0.475
  comM Glaesserella parasuis strain SC1401

47.14

99.412

0.469
  comM Legionella pneumophila str. Paris

46.443

99.216

0.461
  comM Legionella pneumophila strain ERS1305867

46.443

99.216

0.461
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.365

97.647

0.404