Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RA166_RS11335 Genome accession   NZ_CP132741
Coordinates   2468726..2470258 (+) Length   510 a.a.
NCBI ID   WP_076786002.1    Uniprot ID   -
Organism   Mycetohabitans endofungorum strain B14/HKI 0403     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2463726..2475258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA166_RS11315 (RA166_11350) gshA 2464461..2465750 (-) 1290 WP_076786006.1 glutamate--cysteine ligase -
  RA166_RS11320 (RA166_11355) - 2466106..2467608 (-) 1503 WP_076796417.1 ammonium transporter -
  RA166_RS11325 (RA166_11360) - 2467680..2468018 (-) 339 WP_076786004.1 P-II family nitrogen regulator -
  RA166_RS11330 (RA166_11365) - 2468414..2468671 (+) 258 WP_076786003.1 accessory factor UbiK family protein -
  RA166_RS11335 (RA166_11370) comM 2468726..2470258 (+) 1533 WP_076786002.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RA166_RS11340 (RA166_11375) - 2470692..2471213 (-) 522 WP_083703715.1 hypothetical protein -
  RA166_RS11345 (RA166_11380) - 2471440..2471955 (+) 516 WP_076797287.1 TlpA disulfide reductase family protein -
  RA166_RS11350 (RA166_11385) lipA 2472047..2473060 (-) 1014 WP_076797289.1 lipoyl synthase -
  RA166_RS11355 (RA166_11390) lipB 2473095..2473793 (-) 699 WP_076797290.1 lipoyl(octanoyl) transferase LipB -
  RA166_RS11360 (RA166_11395) - 2473896..2474222 (-) 327 WP_076797291.1 DUF2917 domain-containing protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54041.19 Da        Isoelectric Point: 8.1012

>NTDB_id=870453 RA166_RS11335 WP_076786002.1 2468726..2470258(+) (comM) [Mycetohabitans endofungorum strain B14/HKI 0403]
MSLAVVRSRAPLHALAPEVTVEVHLANGLPSFAIVGLPDLEVRESRERVRAALAHCGFDVPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPCNALTGREFAGELSLSGTLRPVRGAFAMACGTARQAGPDAAYPELYVPLDNAAEAALAPGVAV
YGAADLATLVAHLKGEPEARIERAQPSGVALPAQPAPDMADVIGQPAARRALEIAAAGSHHMLMVGPPGAGKSMLAQRLP
GILPPMSDDDALACAMLRSASGRGFTAADWRRRPFRAPHHSASAAALVGGYNPPRPGEITLAHLGVLFLDELPEFSRAVL
ETLREPLETGKITISRAAAQTDFPAACQLVAAMNPCPCGLRGDPLGRCRCTPDQIARYVGRLSGPLLDRIDIVIDVPSLS
AAELARRTGARGEASHVIAARVRRARERQLARQHKANCALNAEDLNRWCPLDPRSEALLQICGERLGWSGRAFDKVRRVA
RTIADLDLSDDVLAVHVGEAVQYRRASITV

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=870453 RA166_RS11335 WP_076786002.1 2468726..2470258(+) (comM) [Mycetohabitans endofungorum strain B14/HKI 0403]
ATGTCGCTAGCCGTGGTCCGCAGCCGCGCGCCGTTGCACGCGCTCGCGCCCGAAGTCACTGTCGAAGTCCATTTGGCGAA
CGGCCTGCCGTCGTTTGCGATCGTCGGGCTGCCTGACCTGGAAGTGCGTGAGAGCCGGGAGCGGGTGCGGGCCGCATTGG
CCCATTGCGGTTTCGACGTGCCCGTGCGGCGAATCACCGTCAATCTGGCCCCGGCGGACTTACCGAAGGAATCCGGGCGC
TTCGATTTGCCGATCGCACTGGGCATCCTGGCCGCGAGCGGGCAATTGCCGTGCAATGCACTGACCGGCCGCGAATTCGC
CGGCGAATTATCGCTCAGCGGCACGCTGCGGCCGGTCCGGGGTGCGTTCGCGATGGCGTGCGGCACCGCGAGACAGGCTG
GGCCCGACGCGGCGTACCCGGAACTGTACGTGCCGTTGGACAATGCGGCGGAAGCCGCGCTGGCGCCAGGCGTGGCCGTG
TACGGAGCTGCCGACCTGGCCACGCTCGTCGCGCATCTGAAAGGCGAGCCCGAGGCTCGCATCGAGCGCGCGCAGCCGAG
CGGCGTCGCCCTACCCGCACAACCCGCACCGGATATGGCCGATGTGATCGGCCAACCTGCCGCGCGCCGGGCGCTGGAGA
TCGCTGCCGCCGGCTCGCATCACATGTTGATGGTGGGACCGCCCGGCGCCGGCAAGTCGATGCTGGCGCAACGTCTGCCG
GGCATACTGCCACCGATGTCGGACGACGACGCGCTGGCCTGTGCAATGCTGCGGTCCGCCAGCGGCCGTGGCTTCACGGC
GGCAGACTGGCGGCGCCGTCCGTTTCGCGCGCCGCATCATAGTGCGAGCGCCGCCGCGCTGGTCGGCGGCTACAACCCGC
CACGGCCCGGCGAAATCACACTAGCGCACCTGGGCGTACTGTTCCTCGATGAGCTGCCCGAGTTCAGCCGCGCGGTGCTG
GAGACCCTTCGCGAGCCGCTCGAAACGGGCAAGATCACGATTTCTCGGGCAGCTGCGCAAACCGACTTTCCCGCCGCATG
TCAACTGGTTGCCGCGATGAACCCGTGCCCTTGCGGCTTGCGCGGCGATCCGCTAGGACGGTGCCGATGCACGCCCGATC
AGATCGCCCGCTATGTCGGCAGGCTGTCTGGACCACTGCTCGATCGGATCGACATCGTCATCGACGTGCCTTCGCTGTCG
GCCGCCGAGCTTGCCCGCCGCACCGGCGCGCGCGGCGAAGCGAGCCACGTGATCGCGGCGCGTGTGCGGCGCGCGCGCGA
ACGTCAATTGGCACGCCAGCATAAGGCCAATTGCGCGTTGAATGCTGAGGACCTCAACCGCTGGTGCCCACTCGATCCGC
GCAGCGAAGCGTTACTGCAAATCTGCGGCGAGCGCCTGGGGTGGTCGGGGCGTGCCTTCGACAAGGTGCGCCGCGTTGCG
CGCACCATCGCCGACCTTGATCTGAGCGATGACGTACTCGCTGTCCACGTCGGCGAGGCGGTGCAATACCGGCGCGCGTC
GATCACGGTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.112

99.412

0.488
  comM Haemophilus influenzae Rd KW20

48.221

99.216

0.478
  comM Vibrio campbellii strain DS40M4

48.016

98.824

0.475
  comM Glaesserella parasuis strain SC1401

47.14

99.412

0.469
  comM Legionella pneumophila str. Paris

46.443

99.216

0.461
  comM Legionella pneumophila strain ERS1305867

46.443

99.216

0.461
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.365

97.647

0.404