Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RAH45_RS11435 Genome accession   NZ_CP132595
Coordinates   2682136..2682483 (-) Length   115 a.a.
NCBI ID   WP_068403524.1    Uniprot ID   -
Organism   Psychrobacter sp. van23A     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2677136..2687483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAH45_RS11410 (RAH45_11415) - 2678266..2678946 (-) 681 WP_306495951.1 CheR family methyltransferase -
  RAH45_RS11415 (RAH45_11420) - 2678950..2679264 (-) 315 WP_226928928.1 hypothetical protein -
  RAH45_RS11420 (RAH45_11425) - 2679446..2680451 (-) 1006 Protein_2242 methyl-accepting chemotaxis protein -
  RAH45_RS11425 (RAH45_11430) - 2681033..2681563 (-) 531 WP_068403518.1 chemotaxis protein CheW -
  RAH45_RS11430 (RAH45_11435) - 2681567..2681929 (-) 363 WP_068403521.1 PleD family two-component system response regulator -
  RAH45_RS11435 (RAH45_11440) pilG 2682136..2682483 (-) 348 WP_068403524.1 PleD family two-component system response regulator Regulator
  RAH45_RS11440 (RAH45_11445) - 2682566..2683870 (+) 1305 WP_102076450.1 efflux RND transporter periplasmic adaptor subunit -
  RAH45_RS11445 (RAH45_11450) - 2684135..2684857 (+) 723 WP_068403530.1 response regulator transcription factor -
  RAH45_RS11450 (RAH45_11455) - 2684964..2687108 (+) 2145 WP_193032138.1 ATP-binding protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12878.80 Da        Isoelectric Point: 4.6741

>NTDB_id=869539 RAH45_RS11435 WP_068403524.1 2682136..2682483(-) (pilG) [Psychrobacter sp. van23A]
MVIDDSKTIRRTAETLLQKAGCEVVTAIDGFDALAKIVDNNPDIIFVDIMMPRLDGYQTCALIKNNPDYASKPVIMLSSK
DGLFDKARGRIVGSDEYLTKPFSKDELFEAINQYR

Nucleotide


Download         Length: 348 bp        

>NTDB_id=869539 RAH45_RS11435 WP_068403524.1 2682136..2682483(-) (pilG) [Psychrobacter sp. van23A]
ATGGTAATCGATGACTCAAAAACCATTCGCCGTACCGCAGAAACTTTATTGCAAAAAGCAGGTTGTGAAGTCGTCACCGC
GATTGACGGTTTTGATGCCTTAGCGAAGATTGTTGATAACAATCCAGATATCATTTTTGTAGATATTATGATGCCGCGTT
TAGATGGTTATCAGACTTGTGCCTTGATAAAAAATAATCCAGATTATGCGAGCAAACCGGTGATTATGTTGTCATCGAAA
GATGGTTTGTTTGATAAAGCTCGCGGGCGCATTGTTGGTTCTGATGAGTATTTGACCAAGCCATTTAGTAAAGATGAGCT
TTTTGAGGCGATTAACCAGTATCGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

78.947

99.13

0.783
  vicR Streptococcus mutans UA159

40.351

99.13

0.4
  pilH Synechocystis sp. PCC 6803

39.823

98.261

0.391
  micA Streptococcus pneumoniae Cp1015

42.056

93.043

0.391
  chpA Acinetobacter baumannii strain A118

37.5

97.391

0.365