Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RAL98_RS07945 Genome accession   NZ_CP132544
Coordinates   1569868..1570749 (+) Length   293 a.a.
NCBI ID   WP_251516502.1    Uniprot ID   -
Organism   Staphylococcus sp. HKU1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1555010..1596734 1569868..1570749 within 0


Gene organization within MGE regions


Location: 1555010..1596734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL98_RS07880 (RAL98_07850) - 1555593..1556345 (-) 753 WP_251516471.1 3-oxoacyl-ACP reductase -
  RAL98_RS07885 (RAL98_07855) - 1556709..1556897 (+) 189 WP_251516474.1 helix-turn-helix transcriptional regulator -
  RAL98_RS07890 (RAL98_07860) - 1556903..1557406 (+) 504 WP_251516477.1 hypothetical protein -
  RAL98_RS07895 (RAL98_07865) rpsP 1557589..1557855 (+) 267 WP_251516480.1 30S ribosomal protein S16 -
  RAL98_RS07900 (RAL98_07870) rimM 1558070..1558576 (+) 507 WP_251516482.1 ribosome maturation factor RimM -
  RAL98_RS07905 (RAL98_07875) trmD 1558576..1559313 (+) 738 WP_251516485.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RAL98_RS07910 (RAL98_07880) rplS 1559417..1559767 (+) 351 WP_251516488.1 50S ribosomal protein L19 -
  RAL98_RS07915 (RAL98_07885) - 1560196..1562823 (-) 2628 WP_418128534.1 YfhO family protein -
  RAL98_RS07920 (RAL98_07890) - 1562885..1565455 (-) 2571 WP_418128536.1 YfhO family protein -
  RAL98_RS07925 (RAL98_07895) ylqF 1565816..1566676 (+) 861 WP_251516494.1 ribosome biogenesis GTPase YlqF -
  RAL98_RS07930 (RAL98_07900) - 1566691..1567461 (+) 771 WP_251519019.1 ribonuclease HII -
  RAL98_RS07935 (RAL98_07905) sucC 1567563..1568729 (+) 1167 WP_251516498.1 ADP-forming succinate--CoA ligase subunit beta -
  RAL98_RS07940 (RAL98_07910) sucD 1568751..1569656 (+) 906 WP_251516500.1 succinate--CoA ligase subunit alpha -
  RAL98_RS07945 (RAL98_07915) dprA 1569868..1570749 (+) 882 WP_251516502.1 DNA-processing protein DprA Machinery gene
  RAL98_RS07950 (RAL98_07920) topA 1570909..1572975 (+) 2067 WP_418128539.1 type I DNA topoisomerase -
  RAL98_RS07955 (RAL98_07925) trmFO 1573121..1574428 (+) 1308 WP_251516506.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RAL98_RS07960 (RAL98_07930) xerC 1574513..1575436 (+) 924 WP_418128542.1 tyrosine recombinase XerC -
  RAL98_RS07965 (RAL98_07935) hslV 1575440..1575982 (+) 543 WP_418128544.1 ATP-dependent protease subunit HslV -
  RAL98_RS07970 (RAL98_07940) hslU 1576084..1577490 (+) 1407 WP_251516510.1 ATP-dependent protease ATPase subunit HslU -
  RAL98_RS07975 (RAL98_07945) codY 1577515..1578288 (+) 774 WP_251516513.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  RAL98_RS07980 (RAL98_07950) rpsB 1578731..1579519 (+) 789 WP_251516516.1 30S ribosomal protein S2 -
  RAL98_RS07985 (RAL98_07955) tsf 1579612..1580490 (+) 879 WP_251516519.1 translation elongation factor Ts -
  RAL98_RS07990 (RAL98_07960) pyrH 1580624..1581346 (+) 723 WP_251516523.1 UMP kinase -
  RAL98_RS07995 (RAL98_07965) frr 1581363..1581917 (+) 555 WP_251516527.1 ribosome recycling factor -
  RAL98_RS08000 (RAL98_07970) - 1582141..1582905 (+) 765 WP_251516530.1 isoprenyl transferase -
  RAL98_RS08005 (RAL98_07975) - 1582922..1583704 (+) 783 WP_251516534.1 phosphatidate cytidylyltransferase -
  RAL98_RS08010 (RAL98_07980) rseP 1583959..1585245 (+) 1287 WP_251516536.1 RIP metalloprotease RseP -
  RAL98_RS08015 (RAL98_07985) - 1585264..1586984 (+) 1721 Protein_1528 proline--tRNA ligase -
  RAL98_RS08020 (RAL98_07990) - 1587234..1591550 (+) 4317 WP_418128548.1 PolC-type DNA polymerase III -
  RAL98_RS08025 (RAL98_07995) rimP 1591701..1592168 (+) 468 WP_251516543.1 ribosome maturation factor RimP -
  RAL98_RS08030 (RAL98_08000) nusA 1592189..1593418 (+) 1230 WP_251516545.1 transcription termination factor NusA -
  RAL98_RS08035 (RAL98_08005) rnpM 1593436..1593720 (+) 285 WP_251516547.1 RNase P modulator RnpM -
  RAL98_RS08040 (RAL98_08010) - 1593717..1594034 (+) 318 WP_251516549.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  RAL98_RS08045 (RAL98_08015) infB 1594039..1596138 (+) 2100 WP_418128551.1 translation initiation factor IF-2 -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 34087.49 Da        Isoelectric Point: 9.7728

>NTDB_id=869382 RAL98_RS07945 WP_251516502.1 1569868..1570749(+) (dprA) [Staphylococcus sp. HKU1]
MKTKCLLRLRFAGLTTTRIYQLLSEYPNFLEMSEKRCQYLLSLFLNRIKSKYKEAIHNQFIQCTNEDIEQSLKKWRIHYT
SIYQSTYPTLLREIYHPPLILFYKGNPQLFNEKRTLAIIGSRQATNYTQRALNKLFPSFNMHHFTIISGLAKGADQMAHQ
CALDFSMKTIAVLGFGHLNHYPKETRHLRTHLEKDGLVISEYTPYEKPLKHHFPERNRLISGLSRGVLITESTEKSGTCI
TTQFALDQNRDVYVLPGSLFNPLTKGNLLCAQQGAKIIVKENDILEDFLLRFH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=869382 RAL98_RS07945 WP_251516502.1 1569868..1570749(+) (dprA) [Staphylococcus sp. HKU1]
ATGAAAACAAAATGTTTACTAAGATTAAGGTTCGCTGGATTAACTACGACACGTATTTATCAACTCCTATCTGAATATCC
CAATTTTCTAGAAATGAGTGAAAAACGTTGTCAGTACTTATTAAGTTTGTTTCTCAATCGAATTAAATCAAAGTATAAGG
AAGCAATACATAATCAATTTATACAATGTACAAATGAAGACATCGAGCAATCATTAAAAAAATGGAGAATCCATTATACT
TCAATTTATCAATCTACATATCCTACTTTATTGCGAGAAATTTATCATCCACCTTTAATTTTATTCTACAAAGGTAATCC
TCAATTATTTAATGAAAAGAGAACGTTAGCAATCATCGGCTCAAGACAGGCAACTAATTATACTCAACGTGCACTCAATA
AGCTATTTCCTTCATTTAATATGCATCATTTCACAATTATATCTGGTTTAGCAAAAGGCGCTGATCAAATGGCGCATCAA
TGTGCTCTCGATTTTAGCATGAAGACGATTGCTGTGTTAGGCTTTGGTCATTTGAACCATTACCCAAAGGAAACACGACA
TTTGAGAACCCACTTAGAAAAAGATGGCTTAGTTATTAGTGAATATACACCATATGAAAAGCCATTAAAACATCACTTTC
CAGAACGTAACCGTCTCATCAGTGGTTTATCAAGAGGCGTATTAATCACAGAATCAACTGAAAAAAGTGGGACATGTATC
ACAACTCAATTTGCATTAGATCAAAATAGAGATGTGTATGTGTTGCCAGGGTCTCTGTTCAATCCATTAACTAAAGGAAA
TTTACTTTGCGCACAACAAGGTGCTAAAATCATCGTTAAAGAAAATGATATTCTAGAAGATTTTTTACTTAGATTTCACT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

49.825

97.27

0.485
  dprA Staphylococcus aureus N315

49.825

97.27

0.485
  dprA Lactococcus lactis subsp. cremoris KW2

39.1

98.635

0.386
  dprA Streptococcus mutans UA159

38.947

97.27

0.379
  dprA/cilB/dalA Streptococcus mitis SK321

37.589

96.246

0.362