Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RAN89_RS01950 Genome accession   NZ_CP132507
Coordinates   399858..401411 (+) Length   517 a.a.
NCBI ID   WP_313867992.1    Uniprot ID   -
Organism   Rhodoferax mekongensis strain TBRC 17307     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 394858..406411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAN89_RS01930 (RAN89_01930) - 395807..396718 (-) 912 WP_313867989.1 SMP-30/gluconolactonase/LRE family protein -
  RAN89_RS01935 (RAN89_01935) - 396715..397593 (-) 879 WP_313867990.1 aldose 1-epimerase -
  RAN89_RS01940 (RAN89_01940) amt 397743..399257 (-) 1515 WP_313867991.1 ammonium transporter -
  RAN89_RS01945 (RAN89_01945) glnK 399271..399609 (-) 339 WP_087495551.1 P-II family nitrogen regulator -
  RAN89_RS01950 (RAN89_01950) comM 399858..401411 (+) 1554 WP_313867992.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RAN89_RS01955 (RAN89_01955) - 401503..402582 (-) 1080 WP_313867993.1 hypothetical protein -
  RAN89_RS01960 (RAN89_01960) - 402579..403496 (-) 918 WP_313867994.1 AAA family ATPase -
  RAN89_RS01965 (RAN89_01965) - 403496..405244 (-) 1749 WP_313867995.1 secretin N-terminal domain-containing protein -
  RAN89_RS01970 (RAN89_01970) - 405256..405714 (-) 459 WP_313867996.1 hypothetical protein -
  RAN89_RS01975 (RAN89_01975) - 405711..406334 (-) 624 WP_313867997.1 hypothetical protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54427.15 Da        Isoelectric Point: 7.2992

>NTDB_id=869305 RAN89_RS01950 WP_313867992.1 399858..401411(+) (comM) [Rhodoferax mekongensis strain TBRC 17307]
MSLSLVQSRALLGLEAVQVTVEVHLANGLPSFTLVGLADVEVKEARERVRCAIQNSGLEFPNNKRITVNLAPADLPKDSG
RLDLPIALGILAASGQIDAGALAGFEFAGELSLSGELRSVRGALAMALALRKTSARPQLVLPPGNAEEAALVPDSRVIRA
RHLLDVVHHFAPGGQAKDADGTPLEQDPDGWVRVEAAAPQRASIGPDLADVKGQVAAKRALEIAAAGGHSLLLVGPPGSG
KSMLAQRFAHLLPDLDTDEALESAAIGSLCGRFDMQRWGQRPTCSPHHSASAVALVGGGSPPRPGEISLAHHGVLFLDEL
PEFPRPALEALREPLETGTITIARAARRAEFPARFQLIAAMNPCPCGYLGSSIRACRCTPDQVSRYQGKLSGPLMDRIDL
HVEVPALAAEDLLNSTPGEGSAAIRERSQIARARAVQRQGSSNQALAGQAIDQFVALDPAASKFLQTAAAQLGWSARSTH
RTLKIARTIADLSGAESTQLAHVAEAMQYRRVLKAAG

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=869305 RAN89_RS01950 WP_313867992.1 399858..401411(+) (comM) [Rhodoferax mekongensis strain TBRC 17307]
ATGAGCTTGTCTTTGGTGCAAAGTCGCGCCTTATTGGGGCTGGAAGCGGTGCAAGTGACGGTGGAGGTGCATCTGGCAAA
CGGTTTGCCGAGCTTCACCCTGGTCGGTCTGGCGGATGTGGAAGTCAAAGAAGCCCGCGAGCGGGTGCGCTGTGCCATCC
AGAACAGTGGTCTGGAGTTCCCGAACAACAAGCGGATCACCGTAAACCTTGCCCCGGCCGACCTGCCCAAAGATTCCGGG
CGACTGGATTTGCCGATTGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATCGATGCCGGTGCATTGGCCGGATTTGAATT
TGCGGGGGAGTTGTCACTGTCCGGTGAATTGCGTTCTGTGCGAGGCGCTTTGGCCATGGCTCTGGCTTTGCGCAAGACCA
GCGCCCGCCCGCAATTGGTATTACCGCCCGGCAACGCTGAGGAGGCAGCGCTGGTACCCGACTCCAGGGTCATCCGTGCG
AGGCATTTGCTGGATGTGGTGCACCACTTTGCACCGGGAGGCCAAGCCAAGGATGCCGATGGCACTCCCTTGGAACAGGA
CCCCGACGGATGGGTACGGGTAGAAGCTGCAGCTCCTCAGCGCGCCAGCATCGGCCCGGACCTCGCTGATGTCAAAGGGC
AGGTAGCCGCCAAACGTGCCTTGGAGATTGCTGCCGCCGGAGGCCATAGTCTCCTGTTGGTCGGCCCGCCAGGCTCCGGA
AAGTCCATGTTGGCGCAGCGGTTTGCTCATTTGTTGCCGGATCTGGATACCGATGAGGCCTTGGAAAGTGCAGCCATTGG
TAGCTTGTGCGGACGGTTTGATATGCAACGATGGGGGCAGCGCCCCACCTGCAGCCCGCACCACTCTGCGAGCGCCGTGG
CCTTGGTGGGCGGGGGCTCACCTCCACGCCCCGGTGAAATCTCGTTGGCGCACCACGGTGTCTTGTTTCTGGATGAACTC
CCGGAGTTTCCACGCCCTGCCCTGGAGGCGCTGCGGGAGCCGCTGGAGACCGGCACCATTACCATTGCTCGGGCCGCCCG
GCGTGCCGAGTTTCCGGCACGATTCCAGTTGATTGCGGCCATGAACCCCTGCCCTTGCGGTTATCTGGGCTCCAGCATCC
GGGCCTGTCGCTGCACGCCGGACCAGGTTTCGCGCTATCAGGGCAAACTCAGCGGCCCCTTGATGGACCGCATCGACCTG
CATGTCGAAGTACCGGCTTTAGCTGCGGAAGACCTGCTGAACAGCACACCCGGCGAGGGCAGTGCTGCCATCCGCGAACG
CAGCCAAATTGCAAGGGCGCGCGCTGTCCAGCGCCAAGGCAGCAGCAACCAGGCGCTCGCAGGCCAGGCCATTGACCAGT
TTGTGGCGCTGGATCCGGCAGCCTCCAAGTTTTTGCAAACTGCCGCAGCGCAATTGGGGTGGTCCGCCCGCAGCACCCAC
CGGACCCTGAAGATTGCGCGCACTATTGCGGACCTCTCAGGTGCGGAATCCACCCAGCTGGCCCATGTGGCCGAAGCCAT
GCAATACCGTCGCGTCCTGAAGGCAGCAGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(207-411)

Subunit ChlI of Mg-chelatase (ChlI)

(21-144)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(418-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.904

100

0.501
  comM Haemophilus influenzae Rd KW20

49.71

100

0.497
  comM Glaesserella parasuis strain SC1401

49.805

99.42

0.495
  comM Legionella pneumophila strain ERS1305867

49.419

99.807

0.493
  comM Legionella pneumophila str. Paris

49.419

99.807

0.493
  comM Vibrio campbellii strain DS40M4

48.555

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.553

100

0.426