Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LACZS2_RS00180 Genome accession   NZ_CP132485
Coordinates   38081..40267 (+) Length   728 a.a.
NCBI ID   WP_070650997.1    Uniprot ID   -
Organism   Lacticaseibacillus zeae subsp. silagei strain NCIMB 15475     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 33081..45267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACZS2_RS00145 (LACZS2_000029) - 34042..34410 (-) 369 WP_115656753.1 IS30 family transposase -
  LACZS2_RS00155 (LACZS2_000031) - 35945..36154 (+) 210 WP_070651009.1 leucocin A/sakacin P family class II bacteriocin -
  LACZS2_RS00160 (LACZS2_000032) - 36254..36550 (+) 297 WP_070651007.1 bacteriocin immunity protein -
  LACZS2_RS00165 (LACZS2_000033) - 36738..36941 (+) 204 WP_070651004.1 hypothetical protein -
  LACZS2_RS00170 (LACZS2_000034) - 36984..37199 (+) 216 WP_070651002.1 hypothetical protein -
  LACZS2_RS00175 (LACZS2_000035) - 37355..38041 (+) 687 WP_070650999.1 rhomboid family intramembrane serine protease -
  LACZS2_RS00180 (LACZS2_000036) comA 38081..40267 (+) 2187 WP_070650997.1 peptide cleavage/export ABC transporter Regulator
  LACZS2_RS00185 (LACZS2_000037) - 40279..41658 (+) 1380 WP_093997731.1 bacteriocin secretion accessory protein -
  LACZS2_RS00190 (LACZS2_000038) - 42247..43320 (+) 1074 WP_070650994.1 ammonium transporter -
  LACZS2_RS00195 (LACZS2_000039) - 43340..44449 (+) 1110 WP_070650992.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 728 a.a.        Molecular weight: 81828.10 Da        Isoelectric Point: 8.6840

>NTDB_id=869271 LACZS2_RS00180 WP_070650997.1 38081..40267(+) (comA) [Lacticaseibacillus zeae subsp. silagei strain NCIMB 15475]
MLNIKYGFASRYKRYYSPQIDERDCGVAALNMLLRYNKSDYSLARLRQLAKTDQEGTTALGIVRAAENLDFETSPIKTDM
SLFDLEDVPYPFIAHVLKNGELLHYYVVFKATKKRILIGDPDPSEGMTWLSRERFEKEWSGVAIFIAPKPAYQPQKERKN
GLFDFLPLLVRQKRIIANIIIAAALITVISIVGSYFLQSIIDTYIPNAMRTTMGMIASGLLLAYLLQAILTYGQNFLMAV
LGQRLAIDVILGYVRHLYELPMSFFATRRTGEIISRFSDANKIIDALAHTMMTLFLDVWLVLVLGIVLGIQNGTLFLISL
IAVPCYLVIVFAFQRPFDRLNQETMESNAVLSSSIIENLNGIETIKSLTGERASYERVDREFLGYLKKSFQYTKVDQLQQ
AIKGLLKLILNVVVLWVGANLVMANKMSLGQMLTFNALLSYFTNPLESIINLQPTLQTAKVANNRLNEVYLVESEFKEHR
SVTNRSQIDGTIRVADVSFKYGFGQDILKQINLEVPENAKYTIVGMSGSGKSTLAKLLVGFYPVEANRGEITFNRVPMND
INLSTLRQYIEYVPQDPFIFSGSVLDNLTLGSRPHATEDDIKQACMTAEIAEDIAHLPQQWQTKLSESGSILSGGQKQRL
AIARALLSPAKVLIFDESTSSLDTITERKIVNRLLAMKDRTIIFVAHRLTIAAKTERIIVMDHGELVEQGDHASLLARGG
FYARLVSE

Nucleotide


Download         Length: 2187 bp        

>NTDB_id=869271 LACZS2_RS00180 WP_070650997.1 38081..40267(+) (comA) [Lacticaseibacillus zeae subsp. silagei strain NCIMB 15475]
ATGCTTAATATTAAATATGGATTCGCCAGTCGTTACAAACGATACTATTCACCACAGATTGATGAACGTGACTGCGGTGT
TGCTGCGCTCAATATGTTACTGAGATATAACAAGTCAGACTATTCGCTCGCCCGATTAAGACAATTAGCGAAAACCGACC
AAGAAGGAACGACAGCATTAGGCATTGTTCGAGCCGCGGAAAACTTAGACTTTGAGACCAGTCCAATAAAAACGGACATG
AGCTTGTTTGATCTTGAGGACGTTCCTTATCCGTTTATTGCGCATGTGTTAAAGAACGGGGAGCTACTCCATTATTACGT
AGTTTTCAAGGCAACGAAGAAACGCATTTTAATTGGGGATCCTGACCCTTCAGAAGGCATGACCTGGCTATCACGGGAAC
GATTTGAAAAAGAATGGTCCGGCGTGGCCATCTTTATTGCGCCAAAGCCCGCTTATCAGCCACAAAAGGAGCGTAAGAAT
GGCTTATTTGACTTTCTGCCACTCTTAGTGAGACAAAAGCGGATCATTGCGAACATCATCATTGCTGCTGCGCTAATCAC
CGTGATCAGCATTGTTGGTTCATACTTCTTACAGTCTATTATTGACACGTATATCCCAAATGCCATGCGAACCACTATGG
GCATGATCGCAAGCGGGCTTCTACTGGCTTATTTGTTACAAGCAATATTGACTTATGGTCAGAATTTTCTAATGGCAGTT
TTAGGCCAACGACTCGCCATCGATGTCATATTAGGCTACGTTAGACATTTGTATGAGTTGCCAATGTCTTTCTTTGCCAC
TCGCCGCACTGGCGAAATCATTTCACGGTTTTCTGACGCCAATAAAATTATTGATGCACTGGCTCATACGATGATGACCC
TCTTTTTGGATGTATGGCTTGTCTTAGTTCTGGGTATTGTTTTAGGTATCCAAAATGGCACGCTGTTTTTGATTTCCCTT
ATTGCCGTTCCATGTTATTTGGTCATTGTCTTTGCCTTTCAGCGTCCTTTTGATCGATTGAATCAGGAAACAATGGAAAG
TAATGCCGTTCTAAGTTCTTCAATCATTGAGAACTTAAACGGTATTGAAACGATTAAGTCTCTGACTGGAGAGCGTGCTA
GTTATGAGCGGGTAGATCGTGAGTTTCTAGGTTATCTGAAGAAATCCTTCCAATATACAAAAGTAGACCAGCTCCAGCAG
GCCATTAAGGGTTTGCTGAAATTGATTCTTAACGTTGTGGTGTTGTGGGTCGGAGCCAACCTAGTAATGGCTAATAAAAT
GAGTTTGGGGCAGATGCTGACATTTAATGCTTTGCTGTCCTACTTTACAAACCCGTTAGAAAGTATTATCAATCTACAGC
CAACTTTACAGACGGCTAAAGTTGCAAATAACCGGCTTAATGAAGTTTATCTGGTTGAATCGGAATTTAAAGAGCACCGC
AGCGTCACCAATCGAAGCCAAATTGACGGAACAATTAGAGTTGCCGATGTGTCATTTAAATATGGCTTTGGGCAGGACAT
TCTGAAACAAATCAACCTCGAAGTTCCTGAGAACGCCAAATACACCATTGTTGGTATGAGCGGTTCAGGAAAATCAACTT
TGGCAAAACTATTAGTTGGGTTCTATCCAGTTGAGGCCAATAGAGGAGAGATCACTTTCAACAGAGTGCCAATGAACGAT
ATTAATCTCTCAACGCTACGACAATATATCGAATACGTACCACAGGATCCGTTTATTTTCTCAGGATCGGTCCTCGACAA
TTTGACGTTGGGAAGTCGCCCACATGCAACAGAAGATGATATCAAGCAAGCATGTATGACAGCCGAGATTGCTGAGGACA
TTGCACATTTGCCCCAGCAATGGCAGACCAAGCTTTCGGAAAGCGGTAGTATTTTGTCTGGTGGTCAGAAGCAACGGCTT
GCAATTGCACGCGCTTTACTTTCCCCCGCCAAAGTACTTATTTTTGACGAATCGACAAGCAGCCTGGATACGATTACTGA
ACGTAAGATCGTAAATCGTCTACTGGCAATGAAGGATCGGACCATCATCTTTGTGGCGCATCGTTTAACCATTGCTGCTA
AAACTGAAAGGATCATCGTCATGGATCACGGTGAGCTGGTTGAACAAGGAGATCATGCAAGCTTGTTAGCGCGAGGTGGC
TTTTACGCCCGATTAGTAAGCGAGTGA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(15-150)

ABC transporter (ABC_tran)

(508-660)

ABC transporter transmembrane region (ABC_membrane)

(178-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

57.902

98.214

0.569
  comA Streptococcus pneumoniae Rx1

57.902

98.214

0.569
  comA Streptococcus pneumoniae D39

57.902

98.214

0.569
  comA Streptococcus pneumoniae R6

57.902

98.214

0.569
  comA Streptococcus pneumoniae TIGR4

57.622

98.214

0.566
  comA Streptococcus mitis SK321

57.343

98.214

0.563
  comA Streptococcus gordonii str. Challis substr. CH1

56.364

98.214

0.554
  comA/nlmT Streptococcus mutans UA159

54.469

98.352

0.536