Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RAM45_RS10965 Genome accession   NZ_CP132393
Coordinates   2285279..2287123 (-) Length   614 a.a.
NCBI ID   WP_199274954.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain CUVET17-450     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2280279..2292123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM45_RS10950 (RAM45_10865) recQ 2280427..2282208 (-) 1782 WP_014614539.1 DNA helicase RecQ -
  RAM45_RS10955 (RAM45_10870) - 2282218..2284095 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  RAM45_RS10960 (RAM45_10875) - 2284207..2285022 (+) 816 WP_015728742.1 ZIP family metal transporter -
  RAM45_RS10965 (RAM45_10880) comA 2285279..2287123 (-) 1845 WP_199274954.1 peptide cleavage/export ABC transporter Regulator
  RAM45_RS10970 (RAM45_10885) comA/nlmT 2287123..2287320 (-) 198 WP_197737723.1 cysteine peptidase family C39 domain-containing protein Regulator
  RAM45_RS10975 (RAM45_10890) - 2287244..2287435 (-) 192 WP_197737724.1 cysteine peptidase family C39 domain-containing protein -
  RAM45_RS10980 (RAM45_10895) - 2287810..2288118 (-) 309 WP_063284913.1 DUF3884 family protein -
  RAM45_RS10985 (RAM45_10900) - 2288193..2289323 (-) 1131 WP_185957898.1 glycosyltransferase -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 69943.04 Da        Isoelectric Point: 9.9175

>NTDB_id=869034 RAM45_RS10965 WP_199274954.1 2285279..2287123(-) (comA) [Staphylococcus pseudintermedius strain CUVET17-450]
MRCDKKYIYIADPVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTSFIPLLLKEKRLIIKIIIISILVNMIN
ILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSINILSPYIKHLFRLPITFFETGRA
GDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIVFGFMNSFERKRIKSMEANAT
LSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQLILNVSILWVGANLVIDNQISIG
TLLVFNSLMIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSSKLIFSNISYGYVYEKEILTD
INITIEHNSKVAFIGESGSGKTTLAKLMVSFFEPSKGKITLGGLDITNINKSVLRQQIIYIPQQTYIFNGTILENLLLGV
VKEVTQKDIDSAIKMVELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSILIMDEATSNIDILTERKIIN
NLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=869034 RAM45_RS10965 WP_199274954.1 2285279..2287123(-) (comA) [Staphylococcus pseudintermedius strain CUVET17-450]
ATTAGATGTGATAAAAAGTATATCTATATAGCTGACCCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGA
AGAGTGGACTGGAGTTACAATCTTATTAAAACCTACATCTTTATATAAGCCTATAAAGCAAGATAAAGTTCGTTTAACTT
CTTTTATACCTTTATTATTAAAAGAAAAAAGATTGATTATAAAAATAATAATCATTTCCATTTTAGTCAATATGATAAAT
ATTTTAGGTTCATATTTTATGAAGTCAATTATTGATTTTTATATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTC
CATGGCTTTAATTGCTTCTTACATTATGCAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGA
CATATTCTATAAATATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGGGAAGAGCA
GGAGACATACTATCAAGACTTAATGATGCAAATTCAATTACTGATGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGA
TGTTACAATAATAGTTGGCATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTC
CTATTTATGCCGTAATTGTTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACT
TTGTCTTCTTATTTGATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCA
GATAAAATATAATTTTTCGAATTATTACGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAA
AGGTTGTTCAATTAATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGA
ACTTTGCTTGTTTTTAATTCATTAATGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACA
AATAGCAGGTGTGGCTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCA
AATTGAACCAAAACTCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGTGTACGAAAAAGAAATCCTTACAGAT
ATTAATATAACAATAGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAATT
GATGGTTAGTTTTTTTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTT
TACGACAGCAGATTATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTA
GTTAAAGAGGTTACGCAAAAGGACATAGATAGTGCTATTAAAATGGTTGAACTAAAATCCTTTATTGATAGCTTACCACT
TGGACTTGATAGTGTATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCAC
TATTAACAAATTCTTCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAAT
AATTTGATGGCGTTAAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGT
TTTAGCAAAAGGAAAAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTA
ATTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(3-39)

ABC transporter transmembrane region (ABC_membrane)

(67-335)

ABC transporter (ABC_tran)

(398-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

52.365

99.837

0.523
  comA Streptococcus mitis NCTC 12261

52.202

99.837

0.521
  comA Streptococcus pneumoniae R6

51.876

99.837

0.518
  comA Streptococcus pneumoniae Rx1

51.876

99.837

0.518
  comA Streptococcus pneumoniae D39

51.876

99.837

0.518
  comA Streptococcus pneumoniae TIGR4

51.55

99.837

0.515
  comA Streptococcus gordonii str. Challis substr. CH1

51.55

99.837

0.515
  comA/nlmT Streptococcus mutans UA159

48.764

98.86

0.482