Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAM11_RS08920 Genome accession   NZ_CP132383
Coordinates   1955078..1955593 (+) Length   171 a.a.
NCBI ID   WP_110447548.1    Uniprot ID   -
Organism   Gilliamella apis strain K-MP18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1950078..1960593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM11_RS08890 (RAM11_08890) - 1950749..1951450 (+) 702 WP_306243135.1 YggS family pyridoxal phosphate-dependent enzyme -
  RAM11_RS08895 (RAM11_08895) - 1951487..1952044 (+) 558 WP_198220561.1 YggT family protein -
  RAM11_RS08900 (RAM11_08900) - 1952072..1952494 (-) 423 WP_086363791.1 YcgN family cysteine cluster protein -
  RAM11_RS08905 (RAM11_08905) - 1952491..1952739 (-) 249 WP_086363790.1 YcgL domain-containing protein -
  RAM11_RS08910 (RAM11_08910) - 1952762..1953721 (-) 960 WP_086363789.1 glucokinase -
  RAM11_RS08915 (RAM11_08915) corA 1953920..1954861 (-) 942 WP_110447549.1 magnesium/cobalt transporter CorA -
  RAM11_RS08920 (RAM11_08920) ssb 1955078..1955593 (+) 516 WP_110447548.1 single-stranded DNA-binding protein Machinery gene
  RAM11_RS08925 (RAM11_08925) - 1955695..1956429 (-) 735 WP_306243138.1 AraC family transcriptional regulator -
  RAM11_RS08930 (RAM11_08930) - 1956605..1957501 (+) 897 WP_086359464.1 DMT family transporter -
  RAM11_RS08935 (RAM11_08935) - 1957613..1958275 (+) 663 WP_133052222.1 MarC family NAAT transporter -
  RAM11_RS08940 (RAM11_08940) - 1958320..1959012 (-) 693 WP_306243141.1 DUF2461 domain-containing protein -
  RAM11_RS08945 (RAM11_08945) kdsB 1959016..1959780 (-) 765 WP_110447544.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RAM11_RS08950 (RAM11_08950) - 1959802..1959987 (-) 186 WP_086359461.1 Trm112 family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18694.49 Da        Isoelectric Point: 4.6400

>NTDB_id=868923 RAM11_RS08920 WP_110447548.1 1955078..1955593(+) (ssb) [Gilliamella apis strain K-MP18]
MANRGINKVILVGNLGQDPEIRYMPNGNAVANFSVATSESWKDKQTGENRDRTEWHRVVVFGKLAEIAGEYVKKGTQVYL
EGQLQTRKWQDQAGNDRYTTEVVINAVGGTLQILGSRSGDSFNDGSQNWGQSANNTSSAPSTPRSSTANEPAASQPTMPE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=868923 RAM11_RS08920 WP_110447548.1 1955078..1955593(+) (ssb) [Gilliamella apis strain K-MP18]
ATGGCAAACCGAGGTATTAATAAAGTCATTTTAGTAGGTAATTTAGGTCAGGATCCAGAAATTCGTTACATGCCAAACGG
TAACGCTGTCGCAAATTTTAGTGTTGCCACATCAGAATCTTGGAAAGATAAACAAACTGGTGAAAACAGAGATCGTACCG
AATGGCATCGCGTTGTTGTATTTGGTAAATTAGCTGAAATTGCTGGCGAATATGTCAAAAAAGGTACTCAAGTTTACTTA
GAAGGACAATTACAAACACGTAAATGGCAAGACCAAGCAGGTAATGATCGTTATACTACTGAAGTAGTGATAAATGCTGT
AGGTGGCACATTACAGATTTTAGGCTCTCGATCTGGTGATAGTTTTAATGATGGCTCACAAAACTGGGGACAAAGTGCTA
ATAATACTTCGTCTGCTCCTAGTACACCACGTTCTTCAACAGCAAATGAACCAGCAGCTAGTCAACCAACTATGCCTGAA
CCACCAATGGACTTCGATGACGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.778

100

0.608
  ssb Glaesserella parasuis strain SC1401

52.151

100

0.567
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.491
  ssb Neisseria meningitidis MC58

46.409

100

0.491
  ssb Latilactobacillus sakei subsp. sakei 23K

35.754

100

0.374