Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAM17_RS09135 Genome accession   NZ_CP132381
Coordinates   1985807..1986322 (+) Length   171 a.a.
NCBI ID   WP_110447548.1    Uniprot ID   -
Organism   Gilliamella apis strain ESL0172     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1980807..1991322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM17_RS09105 (RAM17_09105) - 1981478..1982179 (+) 702 WP_110447552.1 YggS family pyridoxal phosphate-dependent enzyme -
  RAM17_RS09110 (RAM17_09110) - 1982216..1982773 (+) 558 WP_110447551.1 YggT family protein -
  RAM17_RS09115 (RAM17_09115) - 1982801..1983223 (-) 423 WP_086363791.1 YcgN family cysteine cluster protein -
  RAM17_RS09120 (RAM17_09120) - 1983220..1983468 (-) 249 WP_086363790.1 YcgL domain-containing protein -
  RAM17_RS09125 (RAM17_09125) - 1983491..1984450 (-) 960 Protein_1775 glucokinase -
  RAM17_RS09130 (RAM17_09130) corA 1984649..1985590 (-) 942 WP_110447549.1 magnesium/cobalt transporter CorA -
  RAM17_RS09135 (RAM17_09135) ssb 1985807..1986322 (+) 516 WP_110447548.1 single-stranded DNA-binding protein Machinery gene
  RAM17_RS09140 (RAM17_09140) - 1986424..1987158 (-) 735 WP_220000043.1 AraC family transcriptional regulator -
  RAM17_RS09145 (RAM17_09145) - 1987334..1988230 (+) 897 WP_110447547.1 DMT family transporter -
  RAM17_RS09150 (RAM17_09150) - 1988342..1989004 (+) 663 WP_133052222.1 MarC family NAAT transporter -
  RAM17_RS09155 (RAM17_09155) - 1989049..1989741 (-) 693 WP_110447545.1 DUF2461 domain-containing protein -
  RAM17_RS09160 (RAM17_09160) kdsB 1989745..1990509 (-) 765 WP_110447544.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RAM17_RS09165 (RAM17_09165) - 1990531..1990716 (-) 186 WP_086359461.1 Trm112 family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18694.49 Da        Isoelectric Point: 4.6400

>NTDB_id=868886 RAM17_RS09135 WP_110447548.1 1985807..1986322(+) (ssb) [Gilliamella apis strain ESL0172]
MANRGINKVILVGNLGQDPEIRYMPNGNAVANFSVATSESWKDKQTGENRDRTEWHRVVVFGKLAEIAGEYVKKGTQVYL
EGQLQTRKWQDQAGNDRYTTEVVINAVGGTLQILGSRSGDSFNDGSQNWGQSANNTSSAPSTPRSSTANEPAASQPTMPE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=868886 RAM17_RS09135 WP_110447548.1 1985807..1986322(+) (ssb) [Gilliamella apis strain ESL0172]
ATGGCAAACCGAGGTATTAATAAAGTCATTTTAGTAGGTAATTTAGGTCAGGATCCAGAAATTCGTTACATGCCAAACGG
TAACGCTGTCGCAAATTTTAGTGTTGCCACATCAGAATCTTGGAAAGATAAACAAACTGGTGAAAACAGAGATCGTACCG
AATGGCATCGCGTTGTTGTATTTGGTAAATTAGCTGAAATTGCTGGCGAATATGTCAAAAAAGGTACTCAAGTTTACTTA
GAAGGACAATTACAAACACGTAAATGGCAAGACCAAGCGGGTAATGATCGTTATACTACTGAAGTAGTGATAAATGCTGT
AGGTGGCACATTACAGATTTTAGGCTCTCGATCTGGTGATAGTTTTAATGATGGCTCACAAAACTGGGGACAAAGTGCTA
ATAATACTTCGTCTGCTCCTAGTACACCACGTTCTTCAACAGCAAATGAACCAGCAGCTAGTCAACCAACTATGCCTGAA
CCACCAATGGACTTCGATGACGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.778

100

0.608
  ssb Glaesserella parasuis strain SC1401

52.151

100

0.567
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.491
  ssb Neisseria meningitidis MC58

46.409

100

0.491
  ssb Latilactobacillus sakei subsp. sakei 23K

35.754

100

0.374