Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAM21_RS09695 Genome accession   NZ_CP132380
Coordinates   2149408..2149929 (+) Length   173 a.a.
NCBI ID   WP_025315120.1    Uniprot ID   X2H798
Organism   Gilliamella apicola strain ESL0178     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2144408..2154929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM21_RS09665 (RAM21_09670) - 2145074..2145775 (+) 702 WP_086271595.1 YggS family pyridoxal phosphate-dependent enzyme -
  RAM21_RS09670 (RAM21_09675) - 2145813..2146370 (+) 558 WP_110454420.1 YggT family protein -
  RAM21_RS09675 (RAM21_09680) - 2146409..2146831 (-) 423 WP_110454419.1 YcgN family cysteine cluster protein -
  RAM21_RS09680 (RAM21_09685) - 2146828..2147076 (-) 249 WP_081300805.1 YcgL domain-containing protein -
  RAM21_RS09685 (RAM21_09690) - 2147096..2148055 (-) 960 WP_110454418.1 glucokinase -
  RAM21_RS09690 (RAM21_09695) corA 2148249..2149190 (-) 942 WP_086271592.1 magnesium/cobalt transporter CorA -
  RAM21_RS09695 (RAM21_09700) ssb 2149408..2149929 (+) 522 WP_025315120.1 single-stranded DNA-binding protein Machinery gene
  RAM21_RS09700 (RAM21_09705) - 2150035..2150697 (+) 663 WP_038517210.1 MarC family NAAT transporter -
  RAM21_RS09705 (RAM21_09710) - 2150716..2151408 (-) 693 WP_025315118.1 DUF2461 domain-containing protein -
  RAM21_RS09710 (RAM21_09715) kdsB 2151412..2152176 (-) 765 WP_025315117.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RAM21_RS09715 (RAM21_09720) - 2152197..2152382 (-) 186 WP_110454417.1 Trm112 family protein -
  RAM21_RS09720 (RAM21_09725) lpxK 2152386..2153393 (-) 1008 WP_110454416.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19008.91 Da        Isoelectric Point: 4.9746

>NTDB_id=868872 RAM21_RS09695 WP_025315120.1 2149408..2149929(+) (ssb) [Gilliamella apicola strain ESL0178]
MANRGINKVILVGNLGQDPEVRYMPNGNAVANFSVATSESWKDKQTGETRDRTEWHRVVVFGKLAEIAGEYIKKGTQVYL
EGQLQTRKWQDQSGQDRYTTEVVINPIGGTLQILGSRGNSNDSYDDGSQNWGQSANNISSAPAASSRQPNKNAPAPQPKA
PEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=868872 RAM21_RS09695 WP_025315120.1 2149408..2149929(+) (ssb) [Gilliamella apicola strain ESL0178]
ATGGCAAACCGAGGAATAAATAAAGTCATTTTAGTTGGTAATTTAGGGCAAGATCCTGAAGTCCGTTACATGCCAAATGG
AAATGCTGTAGCTAATTTTAGTGTAGCAACCTCAGAATCATGGAAAGATAAACAAACTGGTGAAACCCGTGATCGCACTG
AATGGCATCGAGTTGTCGTTTTTGGTAAATTAGCCGAAATTGCAGGTGAATACATCAAAAAAGGGACTCAAGTTTATCTT
GAAGGGCAACTGCAAACTCGAAAATGGCAAGACCAATCAGGACAAGATCGTTACACAACAGAAGTAGTGATTAATCCTAT
CGGTGGAACTTTACAAATTCTAGGTTCACGCGGAAACAGTAATGATAGTTATGATGATGGTTCTCAGAATTGGGGACAAA
GTGCTAATAATATTTCATCGGCACCAGCTGCATCATCTCGTCAACCAAATAAAAATGCACCTGCACCACAACCTAAAGCA
CCTGAACCTCCAATGGATTTTGATGACGACATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2H798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.791

100

0.618
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.555
  ssb Neisseria gonorrhoeae MS11

49.724

100

0.52
  ssb Neisseria meningitidis MC58

49.721

100

0.514
  ssb Latilactobacillus sakei subsp. sakei 23K

35.593

100

0.364