Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RAM21_RS02935 Genome accession   NZ_CP132380
Coordinates   621315..622838 (-) Length   507 a.a.
NCBI ID   WP_110455181.1    Uniprot ID   -
Organism   Gilliamella apicola strain ESL0178     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 616315..627838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM21_RS02930 (RAM21_02930) - 620971..621309 (+) 339 WP_025316494.1 DUF413 domain-containing protein -
  RAM21_RS02935 (RAM21_02935) comM 621315..622838 (-) 1524 WP_110455181.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RAM21_RS02940 (RAM21_02940) znuB 622957..623757 (-) 801 WP_110455164.1 zinc ABC transporter permease subunit ZnuB -
  RAM21_RS02945 (RAM21_02945) znuC 623789..624535 (-) 747 WP_086271226.1 zinc ABC transporter ATP-binding protein ZnuC -
  RAM21_RS02950 (RAM21_02950) znuA 624629..625594 (+) 966 WP_181415440.1 zinc ABC transporter substrate-binding protein ZnuA -
  RAM21_RS02955 (RAM21_02955) mepM 625618..626979 (+) 1362 WP_086271228.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55532.92 Da        Isoelectric Point: 10.0272

>NTDB_id=868861 RAM21_RS02935 WP_110455181.1 621315..622838(-) (comM) [Gilliamella apicola strain ESL0178]
MSLATIFTRASIGIQAPQINVEVHISNGLPGFVLVGLPEATVKEAKDRVRSAIINSGFTFPAKKITVNLSPADLPKEGSR
FDLPIAIAILAATQQIPSANLSNYEFLGELALSGEIRAVKGAIPAAISSQKKQRSLIISAENQSEISLIHQGNTLITSNL
VEVCQHLTQEINLPLVAYREHHNGNDTLANLQDIIGQEHAKRALEIAAAGGHNLLLIGPPGTGKTMLATRLTSLLPLLSD
AEALESAAITSLVSSNGSIKNWRKRPFRSPHHSASIAALVGGGSIPKPGEISLAHNGVLFLDELPEFNRKVLDALREPIE
SGEIIISRANAKIKFPARFQLIAAMNPSPTGHYQGTHNRTTPQQIIRYLNRLSGPFLDRFDISIEVPLLPKGALSQRAIK
SESTEMVKERVLRARNIQMERNKKLNSQLTSNDIQLYCQLSDENNEYLEQALIKLGLSARAWHRILKVSRTIADLELSKN
IERKHISEALSYRSMDRLLIQLHKNIG

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=868861 RAM21_RS02935 WP_110455181.1 621315..622838(-) (comM) [Gilliamella apicola strain ESL0178]
ATGTCACTTGCAACTATTTTCACGCGCGCATCCATTGGAATACAAGCTCCACAAATCAATGTAGAGGTTCATATTAGTAA
TGGATTACCTGGTTTTGTCCTAGTTGGGCTTCCTGAAGCAACAGTCAAAGAAGCAAAAGATCGTGTTAGAAGTGCAATTA
TCAATAGTGGTTTTACTTTTCCTGCAAAAAAAATAACAGTTAATTTATCACCAGCAGATCTCCCAAAGGAAGGAAGTCGT
TTTGATTTACCCATTGCCATTGCAATTCTTGCTGCAACACAGCAAATTCCTTCTGCTAATTTATCTAATTATGAATTTTT
AGGAGAACTTGCTTTATCAGGAGAGATTAGAGCGGTTAAAGGTGCTATACCTGCTGCAATTTCATCCCAAAAAAAGCAAC
GTTCGCTAATCATATCTGCAGAGAATCAATCAGAAATATCTTTAATACACCAAGGAAATACATTAATCACAAGTAATTTA
GTTGAGGTGTGTCAACATTTGACCCAAGAAATAAACTTACCGTTAGTTGCTTATAGAGAACATCACAATGGTAATGATAC
GTTAGCTAATTTGCAGGATATTATTGGGCAAGAACATGCTAAAAGAGCATTGGAAATAGCGGCCGCTGGAGGTCATAATT
TATTATTAATAGGTCCACCCGGAACAGGTAAAACTATGTTAGCAACTCGATTAACATCATTGCTGCCTCTCTTATCTGAT
GCAGAAGCACTTGAAAGTGCAGCAATCACTAGTTTGGTTAGTTCAAATGGATCAATCAAAAATTGGCGTAAACGCCCCTT
CAGATCACCTCATCATAGTGCTTCAATTGCAGCATTGGTTGGAGGAGGATCAATACCTAAGCCTGGTGAAATATCACTGG
CTCATAATGGAGTATTGTTTTTAGATGAACTTCCAGAATTTAATCGTAAAGTACTCGATGCATTAAGAGAACCTATTGAA
TCAGGAGAAATCATTATTTCAAGAGCAAATGCTAAAATAAAATTTCCAGCTAGATTTCAACTTATTGCGGCAATGAATCC
TAGTCCTACAGGGCACTATCAAGGAACGCATAATAGAACGACGCCTCAACAAATCATTCGCTACCTAAATCGACTGTCAG
GACCATTTTTAGATAGATTTGATATATCTATTGAAGTTCCACTTTTACCTAAAGGAGCATTAAGCCAGAGAGCAATAAAG
AGTGAATCTACTGAAATGGTAAAAGAAAGAGTTTTACGAGCTAGAAATATTCAAATGGAAAGAAATAAAAAATTAAATAG
CCAACTAACCTCTAATGATATTCAACTTTATTGTCAGTTATCTGATGAAAATAATGAGTATTTGGAACAAGCTTTAATAA
AATTAGGGCTTTCAGCCAGAGCATGGCATAGAATATTGAAAGTATCTCGTACTATTGCAGATTTAGAGCTATCAAAAAAC
ATAGAACGAAAACATATATCAGAAGCTTTAAGTTATCGTTCTATGGATCGATTATTAATTCAATTACACAAAAATATTGG
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.708

100

0.637
  comM Glaesserella parasuis strain SC1401

62.525

100

0.625
  comM Vibrio campbellii strain DS40M4

61.554

99.014

0.609
  comM Vibrio cholerae strain A1552

60.558

99.014

0.6
  comM Legionella pneumophila str. Paris

52.695

98.817

0.521
  comM Legionella pneumophila strain ERS1305867

52.695

98.817

0.521
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.654

100

0.467