Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAM09_RS21930 Genome accession   NZ_CP132377
Coordinates   4564071..4564601 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain KZ11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4559071..4569601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM09_RS21895 (RAM09_21900) - 4559517..4559960 (-) 444 WP_103687524.1 lipocalin-like domain-containing protein -
  RAM09_RS21900 (RAM09_21905) - 4560156..4560416 (+) 261 WP_048325622.1 YdgH/BhsA/McbA-like domain containing protein -
  RAM09_RS21905 (RAM09_21910) - 4560472..4561389 (-) 918 WP_033631981.1 LysR family transcriptional regulator -
  RAM09_RS21910 (RAM09_21915) - 4561517..4562266 (+) 750 WP_004936803.1 3-oxoacyl-ACP reductase family protein -
  RAM09_RS21915 (RAM09_21920) - 4562304..4562780 (-) 477 WP_048325626.1 Rrf2 family transcriptional regulator -
  RAM09_RS21920 (RAM09_21925) - 4562978..4563319 (+) 342 WP_370531229.1 DUF1360 domain-containing protein -
  RAM09_RS21925 (RAM09_21930) - 4563331..4564041 (+) 711 WP_048325631.1 class I SAM-dependent methyltransferase -
  RAM09_RS21930 (RAM09_21935) ssb 4564071..4564601 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RAM09_RS21935 (RAM09_21940) uvrA 4564879..4567707 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  RAM09_RS21940 (RAM09_21945) - 4567937..4568989 (+) 1053 WP_004936787.1 NAD(P)-dependent alcohol dehydrogenase -
  RAM09_RS21945 (RAM09_21950) maa 4569021..4569578 (-) 558 WP_049278422.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=868818 RAM09_RS21930 WP_004936793.1 4564071..4564601(-) (ssb) [Serratia marcescens strain KZ11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=868818 RAM09_RS21930 WP_004936793.1 4564071..4564601(-) (ssb) [Serratia marcescens strain KZ11]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCACAGAACAGCGCACCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364