Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q3V30_RS20420 Genome accession   NZ_CP132353
Coordinates   4312347..4313867 (+) Length   506 a.a.
NCBI ID   WP_306208938.1    Uniprot ID   A0AA50DJ21
Organism   Erwinia pyri strain DE2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4307347..4318867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V30_RS20400 (Q3V30_20395) - 4308916..4309842 (-) 927 WP_306208934.1 branched-chain amino acid transaminase -
  Q3V30_RS20405 (Q3V30_20400) ilvM 4309861..4310118 (-) 258 WP_306208935.1 acetolactate synthase 2 small subunit -
  Q3V30_RS20410 (Q3V30_20405) ilvG 4310115..4311761 (-) 1647 WP_306208936.1 acetolactate synthase 2 catalytic subunit -
  Q3V30_RS20415 (Q3V30_20410) ilvL 4311902..4312000 (-) 99 WP_306208937.1 ilv operon leader peptide -
  Q3V30_RS20420 (Q3V30_20415) comM 4312347..4313867 (+) 1521 WP_306208938.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q3V30_RS20425 (Q3V30_20420) - 4313894..4314232 (-) 339 WP_306208939.1 DUF413 domain-containing protein -
  Q3V30_RS20430 (Q3V30_20425) hdfR 4314354..4315178 (+) 825 WP_306208940.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54895.21 Da        Isoelectric Point: 7.9721

>NTDB_id=868416 Q3V30_RS20420 WP_306208938.1 4312347..4313867(+) (comM) [Erwinia pyri strain DE2]
MSLSVAYTRAAIGITAPLVSVEVHLSNGLPALSLVGLPETTVKEARDRVRSAIINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQIPADKLAQFEFLGELALTGALRGVQGAIPAALAATQAQRQLILSTDNLNDVGLIQNGESLLSNHL
LDVCHFLAGEIELKVACCDCSAAPWLGGDLDEIVGQQQAKRALEICAAGGHNLLLAGPPGTGKTMLATRLNGLMPPLSEK
EALESAAIASLVSSGMMHQQWRQRPFRAPHHTSSRYALVGGGAIPKPGEISLAHNGVLFLDELPEFDRKTLDALREPLES
GEISISRARAKVTYPARFQLIAAMNPSPTGHYQGMHNRSTPQQTLRYLNKLSGPFLDRFDLSLEVPLLPGGSLSRQSKAG
ENSQTVRERVLAARLRQINRADKINALLTPKEIQRDCKISIKDAEWLEEVLNQLGLSVRAWQRILKVARTIADLAQQEDI
QRAHLHEALSYRGIDRLLIHLQKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=868416 Q3V30_RS20420 WP_306208938.1 4312347..4313867(+) (comM) [Erwinia pyri strain DE2]
ATGTCGCTATCTGTAGCCTACACCCGGGCCGCTATCGGAATTACCGCGCCCCTGGTATCTGTTGAAGTCCATCTCAGTAA
CGGACTGCCCGCGCTTTCACTGGTAGGACTCCCTGAAACCACCGTCAAAGAGGCACGCGATCGGGTGCGCAGCGCGATCA
TTAATTGCGGGTTCACCTTTCCGGCAAAGCGGATTACCGTCAATCTTGCCCCGGCCGATCTGCCTAAAGAAGGTGGCAGA
TACGATCTTCCTATCGCGATTGCCATTCTGGCGGCCTCAGAGCAGATCCCTGCGGACAAACTGGCGCAGTTTGAATTCCT
GGGCGAGTTAGCTTTAACAGGCGCTCTGCGGGGCGTTCAGGGAGCAATCCCTGCTGCGCTGGCAGCCACGCAGGCGCAGC
GTCAATTAATCCTCTCTACGGATAATCTGAACGATGTAGGGTTGATTCAAAATGGCGAAAGCTTGCTCAGCAATCATCTG
CTCGATGTCTGCCATTTTTTAGCAGGAGAGATCGAGCTCAAAGTAGCCTGTTGTGACTGCTCTGCCGCCCCCTGGCTGGG
TGGAGATCTGGATGAGATTGTTGGACAGCAGCAGGCAAAGCGGGCGTTGGAGATTTGTGCCGCAGGAGGCCATAATCTTC
TGCTGGCTGGTCCCCCTGGCACCGGGAAAACCATGCTGGCCACCCGGCTCAATGGCCTGATGCCGCCATTGAGCGAGAAA
GAGGCCCTGGAGAGCGCGGCCATTGCCAGCCTGGTCAGTAGCGGCATGATGCATCAACAATGGCGTCAGCGGCCTTTCCG
GGCGCCTCATCACACTTCATCACGTTATGCTCTGGTAGGCGGTGGCGCCATACCAAAACCCGGCGAAATCTCTCTGGCTC
ATAACGGCGTGCTGTTTCTAGATGAATTACCAGAATTTGATCGTAAAACGCTGGATGCACTCAGGGAGCCACTGGAGTCG
GGGGAAATATCTATTTCACGTGCGCGGGCCAAGGTAACCTATCCCGCCCGCTTTCAGCTGATAGCTGCCATGAATCCCAG
TCCGACAGGACACTACCAGGGCATGCATAATCGCAGCACCCCCCAACAAACCCTTCGCTATCTTAATAAGCTTTCCGGGC
CCTTTCTGGACAGGTTTGACTTATCCCTTGAGGTCCCTCTTCTTCCTGGCGGCTCGTTAAGCCGACAGAGTAAAGCCGGC
GAGAACAGCCAGACCGTCCGGGAAAGAGTGCTGGCAGCCCGCTTGCGCCAGATTAACCGCGCCGACAAAATCAATGCGTT
GCTAACGCCTAAGGAGATCCAGCGTGATTGTAAGATAAGTATTAAGGATGCGGAGTGGCTGGAGGAGGTGCTTAACCAAC
TGGGATTATCTGTAAGGGCCTGGCAACGCATTCTTAAAGTTGCCCGAACAATTGCCGATCTGGCACAGCAAGAAGATATC
CAGCGCGCGCATTTGCATGAAGCGCTGAGTTATCGGGGGATCGACAGGTTACTCATTCACTTGCAAAAGAGCCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

100

0.636
  comM Glaesserella parasuis strain SC1401

62.722

100

0.628
  comM Vibrio campbellii strain DS40M4

59.363

99.209

0.589
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

50

100

0.5
  comM Legionella pneumophila strain ERS1305867

50

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.135

99.407

0.439