Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V30_RS19400 Genome accession   NZ_CP132353
Coordinates   4092231..4092779 (-) Length   182 a.a.
NCBI ID   WP_306208595.1    Uniprot ID   A0AA50DLZ7
Organism   Erwinia pyri strain DE2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4087231..4097779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V30_RS19380 (Q3V30_19375) - 4088229..4088903 (-) 675 WP_306208587.1 heavy metal response regulator transcription factor -
  Q3V30_RS19385 (Q3V30_19380) - 4088926..4089687 (-) 762 WP_306208589.1 alpha/beta hydrolase -
  Q3V30_RS19390 (Q3V30_19385) - 4089941..4090495 (+) 555 WP_306208591.1 DUF4142 domain-containing protein -
  Q3V30_RS19395 (Q3V30_19390) - 4090858..4091922 (-) 1065 WP_306208593.1 mechanosensitive ion channel family protein -
  Q3V30_RS19400 (Q3V30_19395) ssb 4092231..4092779 (-) 549 WP_306208595.1 single-stranded DNA-binding protein SSB1 Machinery gene
  Q3V30_RS19405 (Q3V30_19400) uvrA 4093078..4095909 (+) 2832 WP_306208597.1 excinuclease ABC subunit UvrA -
  Q3V30_RS19410 (Q3V30_19405) - 4096197..4097252 (+) 1056 WP_306208599.1 NAD(P)-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19400.34 Da        Isoelectric Point: 5.2456

>NTDB_id=868414 Q3V30_RS19400 WP_306208595.1 4092231..4092779(-) (ssb) [Erwinia pyri strain DE2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAGAPAGGGGQGNNNGWGQPQQPQGGSNNQFSGGQQSRPQQ
PQQNNAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=868414 Q3V30_RS19400 WP_306208595.1 4092231..4092779(-) (ssb) [Erwinia pyri strain DE2]
ATGGCCAGCAGAGGCGTAAACAAAGTGATCCTGGTGGGCAACCTGGGTCAAGACCCGGAAGTCCGCTACATGCCAAATGG
CGGCGCCGTTGCCAACATTACCCTGGCCACGTCTGAAAGCTGGCGTGACAAGCAGACCGGCGAAACCAAAGAGAAAACTG
AATGGCACCGCGTAGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGTTCCCAGGTTTATATC
GAAGGCGCGCTGCAGACCCGCAAATGGACTGACCAGGCTGGCGTAGAGAAATACACTACGGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGTGGCGGTGCAGGCGCACCGGCAGGCGGCGGTGGACAGGGCAACAACA
ACGGTTGGGGCCAGCCTCAGCAGCCGCAGGGCGGCAGCAACAACCAGTTCAGCGGTGGCCAGCAGTCCCGTCCGCAGCAG
CCACAGCAGAACAATGCTCCGGCTAACAATGAACCGCCAATGGATTTTGACGACGATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.196

100

0.72
  ssb Glaesserella parasuis strain SC1401

57.672

100

0.599
  ssb Neisseria meningitidis MC58

44.382

97.802

0.434
  ssb Neisseria gonorrhoeae MS11

44.382

97.802

0.434
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.569

99.451

0.374