Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q9323_RS21670 Genome accession   NZ_CP132347
Coordinates   4736443..4737933 (+) Length   496 a.a.
NCBI ID   WP_345956455.1    Uniprot ID   -
Organism   Pseudomonas fulva strain NY5087     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4731443..4742933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9323_RS21650 (Q9323_21680) - 4731827..4733158 (-) 1332 WP_023532646.1 ammonium transporter -
  Q9323_RS21655 (Q9323_21685) glnK 4733206..4733544 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  Q9323_RS21660 (Q9323_21690) - 4733908..4734165 (+) 258 WP_027913405.1 accessory factor UbiK family protein -
  Q9323_RS21665 (Q9323_21695) - 4734201..4736210 (-) 2010 WP_088522876.1 DUF4034 domain-containing protein -
  Q9323_RS21670 (Q9323_21700) comM 4736443..4737933 (+) 1491 WP_345956455.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q9323_RS21675 (Q9323_21705) - 4738146..4738613 (+) 468 WP_027913402.1 helix-turn-helix domain-containing protein -
  Q9323_RS21680 (Q9323_21710) - 4738610..4739185 (+) 576 WP_345956456.1 PIN domain-containing protein -
  Q9323_RS21685 (Q9323_21715) - 4739365..4740141 (+) 777 WP_345956457.1 alpha/beta hydrolase -
  Q9323_RS21690 (Q9323_21720) - 4740141..4740938 (+) 798 WP_059183535.1 SDR family NAD(P)-dependent oxidoreductase -
  Q9323_RS21695 (Q9323_21725) - 4741067..4741978 (+) 912 WP_196110265.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52630.34 Da        Isoelectric Point: 7.8847

>NTDB_id=868338 Q9323_RS21670 WP_345956455.1 4736443..4737933(+) (comM) [Pseudomonas fulva strain NY5087]
MSLALAHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPARRITQNLAPADLPKDGGR
YDLAIALGILAADAQVPVATLAELECLGELALSGALRPVQGVLPAALAARQAGRALVVPRENAEEASLASGLVVYAVGHL
LELVAHLNGQVPLAAYAANGLLLNPRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQISRYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
QSSADVALQVAHAREVQQRRQGCANAFLNLDGLRQHCSLAAPDQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCTAI
GRAHLAEALQYRPGSG

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=868338 Q9323_RS21670 WP_345956455.1 4736443..4737933(+) (comM) [Pseudomonas fulva strain NY5087]
ATGTCTTTAGCCCTTGCTCACAGCCGCGCCCAGGTAGGCGTGCAGGCCCCGGCCGTCAGCGTTGAAACCCACCTGGCCAA
TGGCTTGCCTCATCTCACACTGGTCGGCTTGCCCGAAACCACGGTCAAGGAAAGCAAGGACCGCGTGCGCAGTGCCATCG
TCAACAGTGGCCTGAACTACCCAGCCCGGCGCATCACGCAAAACCTCGCTCCGGCCGACCTGCCCAAGGACGGTGGCCGC
TACGACCTGGCCATCGCCCTGGGCATCCTGGCCGCCGATGCCCAGGTGCCCGTGGCCACCCTGGCCGAGCTCGAATGCCT
GGGCGAGCTGGCACTGTCGGGCGCGTTGCGGCCGGTACAGGGCGTCTTGCCCGCAGCGCTTGCCGCACGCCAGGCGGGGC
GGGCACTGGTAGTGCCCCGTGAAAATGCCGAGGAAGCCAGCCTTGCCAGTGGCCTGGTGGTGTATGCCGTAGGCCATCTA
TTGGAGCTGGTGGCCCACCTGAACGGACAGGTACCGCTAGCTGCCTATGCCGCCAATGGCTTGCTCCTGAACCCTCGTCC
CTACCCCGACCTGAGCGAGGTGCAGGGGCAACTGGCGGCCAAACGCGCGCTGCTACTGGCCGCTGCCGGGGCGCACAACC
TGCTTTTCACCGGGCCGCCAGGTACTGGCAAAACCTTGTTGGCCAGCCGCCTGCCGGGCCTGCTGCCACCGCTGGATGAG
CATGAAGCGCTGGAGGTCGCCGCCATCCAGTCGGTCAGCGGGCACACCCCGCTGAACAGCTGGCCACAACGGCCGTTTCG
CCACCCTCATCATTCCGCCTCCGGACCTGCGCTGGTGGGTGGCGGAAGCCGGCCGCAGCCCGGGGAAATCACCTTGGCCC
ACCACGGGGTGCTGTTTCTGGACGAGTTGCCCGAATTCGAGCGCCGGGTACTGGAAGTGCTGCGTGAACCCCTGGAATCT
GGCGAGATCGTAATCGCCAGGGCGCGGGATAAAGTGCGCTTTCCCGCCCGCTTTCAGCTCGTCGCTGCCATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCTACAGGGCGATGCCGCTGCAGTACCGAGCAGATATCCCGTTATCGCAACAAACTGT
CAGGCCCGCTACTGGACCGGATCGACTTGCACCTGACCGTGGCGCGCGAGAGCACCACGCTCAACAACCAGCCTTGCGGG
CAAAGCAGCGCCGACGTCGCCCTTCAGGTCGCGCACGCCCGGGAGGTGCAACAACGTCGGCAAGGGTGCGCCAATGCATT
CCTCAACCTCGATGGCCTGCGCCAGCACTGTAGCTTGGCAGCACCTGATCAGGCTTGGTTGGAAGGCGCCTGTGAACGAT
TGACGCTGTCGCTGCGAGCAGCACACCGATTGCTCAAGGTCGCCAGAACACTGGCAGACCTCGAGGGATGCACGGCAATT
GGCCGGGCGCACCTGGCTGAGGCCCTGCAGTACCGTCCCGGGAGTGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio campbellii strain DS40M4

55.444

100

0.554
  comM Vibrio cholerae strain A1552

55.354

99.798

0.552
  comM Glaesserella parasuis strain SC1401

53.8

100

0.542
  comM Legionella pneumophila str. Paris

49.899

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.899

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.856

99.395

0.466