Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RAB71_RS19625 Genome accession   NZ_CP132343
Coordinates   4633405..4634958 (+) Length   517 a.a.
NCBI ID   WP_010341858.1    Uniprot ID   A0A2P5Z496
Organism   Xanthomonas sacchari strain CFBP4641     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4628405..4639958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB71_RS19600 (RAB71_19590) speA 4628486..4630375 (-) 1890 WP_010341852.1 arginine decarboxylase -
  RAB71_RS19605 (RAB71_19595) speE 4630617..4631468 (+) 852 WP_010341853.1 polyamine aminopropyltransferase -
  RAB71_RS19610 (RAB71_19600) - 4631659..4632447 (+) 789 WP_234006527.1 hypothetical protein -
  RAB71_RS19615 (RAB71_19605) - 4632607..4632945 (-) 339 WP_010341856.1 P-II family nitrogen regulator -
  RAB71_RS19620 (RAB71_19610) - 4633122..4633391 (+) 270 WP_010341857.1 accessory factor UbiK family protein -
  RAB71_RS19625 (RAB71_19615) comM 4633405..4634958 (+) 1554 WP_010341858.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RAB71_RS19630 (RAB71_19620) - 4635037..4635879 (-) 843 WP_010341860.1 alpha/beta fold hydrolase -
  RAB71_RS19640 (RAB71_19630) ubiA 4636528..4637436 (+) 909 WP_010341861.1 4-hydroxybenzoate octaprenyltransferase -
  RAB71_RS19645 (RAB71_19635) - 4637668..4638147 (+) 480 WP_010341862.1 GNAT family N-acetyltransferase -
  RAB71_RS19650 (RAB71_19640) - 4638193..4638924 (-) 732 WP_087943464.1 ComF family protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54842.59 Da        Isoelectric Point: 8.2692

>NTDB_id=868305 RAB71_RS19625 WP_010341858.1 4633405..4634958(+) (comM) [Xanthomonas sacchari strain CFBP4641]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAEAGRTLIVPADNGAEAALAQHVQAFTARTL
LEVCGLLNGSKTLPAATAPPAVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALESAAIASVSGRGVDPARWRQRPYRAPHHTASAVSLVGGGSHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPCSCGWAGDPSGRCRCSEDAVRRYRARISGPLLDRIDLHVDVPRLPPQALRADAPP
GESSAAVRERVEQARQRQQARAGRPNGQLGHSETLRDCRLQPRDEALLEQAIERLRLSARSLHRILRVARTIADLDASDA
IATAHLTEAIAYRQLDRCEPTASAVGLTSPGARRLVG

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=868305 RAB71_RS19625 WP_010341858.1 4633405..4634958(+) (comM) [Xanthomonas sacchari strain CFBP4641]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTCTCCGG
CGGCCTGCCGGCCACCCAGATCGTCGGCCTGCCCGAGGCGGCGGTACGCGAATCGCGCGATCGCGTCCGCGCCGCCCTGC
TCTGCGCGCAATACGAATTCCCGGCACGGCGGATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGCCAGCTCGACCCGCAGGTGCTCGGCCAGTACGAATTCCT
CGGCGAACTGGCGCTGACCGGCGAACTGCGCCCGGTCGACGGGGTCCTGCCGGCCGCGCTGGCCGCCGCCGAGGCCGGGC
GCACCCTGATCGTCCCGGCCGACAACGGCGCCGAGGCGGCACTGGCGCAACACGTGCAGGCCTTCACCGCGCGCACCCTG
CTGGAGGTCTGCGGATTGCTCAACGGCAGCAAGACCCTGCCTGCGGCGACGGCGCCGCCGGCGGTCGCCGCGCCCTTTCC
CGACCTGAGCGACGTCCGCGGCCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCGGCGGGGCATCACCACCTCTTGC
TGATCGGCAGTCCCGGCTGCGGCAAAACCCTGCTGGCCTCGCGCCTGCCCGGGATCCTGCCCGAAGCCAGCGAAGCCGAG
GCGCTTGAGAGCGCGGCCATCGCCTCGGTCAGCGGCCGCGGCGTGGATCCGGCGCGCTGGCGGCAACGCCCGTACCGCGC
ACCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGTGGCGGCAGCCATCCGCGTCCCGGCGAGATCTCGCTCGCGCACC
ATGGCGTGCTGTTCCTGGACGAGTTGCCCGAGTGGAACCGGCATGCGCTGGAAGTGCTGCGCGAGCCACTGGAGTCGGGC
CAGGTGACCGTGTCACGCGCGGCACGCAGCGCCGAGTTCCCTGCGCGCTTCCAGTTGGTCGCGGCGATGAATCCCTGCTC
CTGCGGCTGGGCCGGCGACCCCAGCGGCCGCTGCCGCTGCAGCGAGGACGCGGTGCGGCGCTATCGCGCACGCATCTCCG
GCCCACTGCTGGACCGCATCGACCTGCACGTGGACGTACCGCGGCTGCCGCCGCAGGCGTTGCGCGCCGATGCGCCGCCA
GGCGAGTCCAGTGCCGCCGTGCGCGAACGCGTGGAACAGGCACGACAACGCCAGCAGGCCCGCGCCGGCCGGCCCAACGG
CCAGCTCGGCCACAGCGAAACGCTGCGCGACTGCCGCCTGCAACCGCGCGACGAGGCGCTGCTGGAACAGGCCATCGAGC
GCCTGCGGCTGTCGGCACGCTCGCTGCACCGGATCCTGCGCGTGGCACGCACCATCGCCGACCTGGACGCCAGCGACGCG
ATCGCCACCGCGCACCTGACCGAGGCCATCGCGTACCGGCAACTGGACCGCTGCGAGCCGACGGCCAGCGCCGTGGGTCT
GACGTCACCCGGAGCACGCCGCCTGGTCGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P5Z496

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

97.872

0.534
  comM Vibrio campbellii strain DS40M4

54.028

98.453

0.532
  comM Haemophilus influenzae Rd KW20

53.861

97.679

0.526
  comM Glaesserella parasuis strain SC1401

52.475

97.679

0.513
  comM Legionella pneumophila str. Paris

50.503

96.132

0.485
  comM Legionella pneumophila strain ERS1305867

50.503

96.132

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.614

99.226

0.453