Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RAB70_RS05475 Genome accession   NZ_CP132342
Coordinates   1264380..1265933 (-) Length   517 a.a.
NCBI ID   WP_148827434.1    Uniprot ID   -
Organism   Xanthomonas sontii strain PPL1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1259380..1270933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB70_RS05470 (RAB70_05470) - 1263460..1264299 (+) 840 WP_148827436.1 alpha/beta fold hydrolase -
  RAB70_RS05475 (RAB70_05475) comM 1264380..1265933 (-) 1554 WP_148827434.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RAB70_RS05480 (RAB70_05480) ubiK 1265947..1266216 (-) 270 WP_017908021.1 ubiquinone biosynthesis accessory factor UbiK -
  RAB70_RS05485 (RAB70_05485) - 1266393..1266731 (+) 339 WP_010341856.1 P-II family nitrogen regulator -
  RAB70_RS05490 (RAB70_05490) - 1266891..1267418 (-) 528 WP_225851493.1 hypothetical protein -
  RAB70_RS05495 (RAB70_05495) - 1267346..1267621 (-) 276 WP_225851492.1 hypothetical protein -
  RAB70_RS05500 (RAB70_05500) speE 1267874..1268725 (-) 852 WP_017916998.1 polyamine aminopropyltransferase -
  RAB70_RS05505 (RAB70_05505) speA 1269031..1270920 (+) 1890 WP_148827432.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54929.75 Da        Isoelectric Point: 8.8944

>NTDB_id=868271 RAB70_RS05475 WP_148827434.1 1264380..1265933(-) (comM) [Xanthomonas sontii strain PPL1]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPTTQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAQAGRTLIVPADNGAEAALAQHVQAYTARTL
LEVCGLLNGSKTLPAATAPPTVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPAASEAE
ALESAAIASVSGRGVDPARWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSEDAVRRYRARISGPLLDRIDLHVEVPRLPPQALRADAPP
GEASAVVRERVEQARQRQQARAGRPNGQLGHSETLRDCRLQPRDEALLEQAIERLRLSARSLHRILRVARTIADLDASER
IATAHLTEAIAYRQLDRGEATANAVGPTPPGARRLAG

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=868271 RAB70_RS05475 WP_148827434.1 1264380..1265933(-) (comM) [Xanthomonas sontii strain PPL1]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTGTCCGG
CGGCCTGCCGACCACGCAGATCGTCGGCCTGCCCGAGGCGGCGGTACGCGAGTCGCGCGATCGCGTCCGCGCCGCCCTGC
TCTGCGCGCAGTACGAATTTCCGGCACGGCGGATCACGGTCAACCTGGCGCCGGCCGACCTACCCAAGGAGGGCGGTCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGCCAGCTCGACCCGCAGGTGCTCGGCCAGTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCCCGGTCGACGGCGTCCTGCCGGCCGCACTGGCCGCCGCCCAGGCTGGGC
GCACCCTGATCGTCCCGGCCGACAACGGCGCCGAGGCCGCACTGGCGCAACACGTGCAGGCCTACACCGCACGCACCCTG
CTGGAAGTCTGTGGATTGCTCAACGGCAGCAAGACCCTGCCCGCGGCCACCGCGCCGCCCACGGTCGCCGCCCCCTTTCC
CGACCTGAGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCGGCCGGGCATCACCACCTGTTGC
TGATCGGCAGCCCCGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGATCCTGCCCGCCGCCAGCGAAGCCGAG
GCCCTGGAGAGCGCGGCCATCGCTTCGGTCAGCGGCCGCGGCGTGGATCCGGCACGCTGGCGGCAACGCCCCTACCGCGC
ACCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACTCATCCGCGCCCGGGCGAGATCTCGCTGGCGCACC
ACGGCGTGCTGTTCCTGGACGAACTGCCGGAGTGGAACCGGCATGCGCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
CAGGTGACCGTGTCGCGCGCGGCGCGCAGCGCCGAGTTCCCTGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTGTCC
GTGCGGCTGGGCCGGCGACCCCAGCGGCCGCTGTCGCTGCAGCGAGGACGCGGTGCGGCGCTACCGCGCTCGCATCTCCG
GCCCGCTGCTGGACCGCATCGACCTGCACGTGGAAGTGCCGCGGCTGCCGCCACAGGCGCTGCGCGCCGATGCGCCGCCC
GGCGAAGCCAGCGCCGTCGTGCGCGAGCGCGTGGAGCAGGCGCGGCAACGCCAGCAGGCCCGCGCCGGCCGGCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCTTGCAACCGCGCGACGAGGCGCTGCTGGAACAGGCCATCGAGC
GCCTGCGGCTGTCGGCGCGCTCGCTGCATCGGATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGACGCCAGCGAGCGC
ATCGCCACCGCGCACCTGACCGAGGCCATCGCGTACCGGCAACTGGATCGCGGGGAGGCGACGGCGAACGCCGTGGGTCC
GACGCCACCCGGGGCACGCCGCCTGGCAGGATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.028

98.453

0.532
  comM Vibrio cholerae strain A1552

55.11

96.518

0.532
  comM Haemophilus influenzae Rd KW20

54.563

97.485

0.532
  comM Glaesserella parasuis strain SC1401

52.778

97.485

0.515
  comM Legionella pneumophila str. Paris

50.101

96.132

0.482
  comM Legionella pneumophila strain ERS1305867

50.101

96.132

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.58

98.453

0.449