Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q8L25_RS04640 Genome accession   NZ_CP132339
Coordinates   1031454..1032974 (-) Length   506 a.a.
NCBI ID   WP_308923762.1    Uniprot ID   -
Organism   Janthinobacterium sp. J1-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026454..1037974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8L25_RS04625 - 1028894..1030225 (-) 1332 WP_308923759.1 IS4 family transposase -
  Q8L25_RS04630 - 1030351..1030695 (-) 345 WP_308923760.1 DUF1840 domain-containing protein -
  Q8L25_RS04635 - 1030855..1031400 (-) 546 WP_308923761.1 hypothetical protein -
  Q8L25_RS04640 comM 1031454..1032974 (-) 1521 WP_308923762.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q8L25_RS04645 - 1033069..1033338 (-) 270 WP_308923763.1 accessory factor UbiK family protein -
  Q8L25_RS04650 - 1033607..1034374 (+) 768 WP_308923764.1 TorF family putative porin -
  Q8L25_RS04655 - 1034386..1034724 (+) 339 WP_065308187.1 P-II family nitrogen regulator -
  Q8L25_RS04660 - 1034736..1036301 (+) 1566 WP_308923765.1 ammonium transporter -
  Q8L25_RS04665 gshA 1036496..1037794 (+) 1299 WP_308923766.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54237.47 Da        Isoelectric Point: 8.6851

>NTDB_id=868254 Q8L25_RS04640 WP_308923762.1 1031454..1032974(-) (comM) [Janthinobacterium sp. J1-1]
MSLAVLKSRALAGMEAPEVNVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPAEQLHEYEFAGELSLSGQLRPIRGALAMTFAMQRGKSGAPRAFILPHANADEAALVANASIYP
AHSLLEVCAHFAARDQRTALQRHQPALLAPHFSYPDFAEVQGQHHARRALEVAAAGGHSLLMVGPPGAGKTMLASRFPGI
LPLMSDEEALEAAAVHSLAGNFKVENWKRRPYRAPHQTASGVALVGGGHVPRPGEISLAHCGVLFLDEIAEFDRRVLDVL
RQPMESGMISISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHGRLSGPLLDRIDLQIEVPAMAPTM
LGAKAVAGESTAAIATRVAAAFAVQLARQGKANHQLNNQEIALHCQLDAAGEQLLHGAMLRLHWSARTYHRVLRVARSIA
DLAGSAAIARAHVAEAIQYRRILHVA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=868254 Q8L25_RS04640 WP_308923762.1 1031454..1032974(-) (comM) [Janthinobacterium sp. J1-1]
ATGAGCCTGGCAGTCTTGAAAAGCCGCGCCCTGGCGGGCATGGAAGCGCCCGAGGTCAATGTCGAGGTACACCTCGCCAA
CGGCCTGCCTTCGTTTACCATCGTGGGCCTGCCCGATACCGAGGTCAAGGAGTCGCGCGACCGCGTGCGTGCGGCGCTGC
AAAATTGCGGCTTCGAGATGCCAGCCCGGCGCATCACGGCCAACCTGGCACCAGCGGACCTGCCGAAAGAATCGGGGCGC
TTCGACCTGCCAATCGCGCTGGGCATCCTGGCCGCTTCGGGCCAGCTGCCCGCCGAACAATTACATGAATATGAATTTGC
CGGCGAGCTGTCGCTGTCGGGACAGTTGCGGCCCATCCGTGGCGCGCTGGCGATGACGTTTGCCATGCAGCGCGGCAAGA
GTGGCGCGCCGCGTGCGTTCATTTTGCCGCACGCCAATGCCGACGAGGCGGCGCTGGTCGCGAACGCCAGCATTTATCCG
GCCCACAGCCTGCTCGAAGTGTGCGCCCATTTCGCCGCGCGCGATCAGCGCACCGCCCTGCAGCGGCACCAGCCGGCCTT
GCTGGCGCCACATTTTTCCTATCCCGACTTTGCTGAGGTACAGGGCCAGCACCATGCTCGGCGGGCGCTGGAGGTGGCGG
CCGCCGGCGGTCACAGCCTGCTGATGGTGGGCCCGCCCGGCGCCGGCAAGACCATGCTGGCCAGCCGCTTTCCCGGCATC
CTGCCTTTGATGAGCGATGAAGAAGCGCTGGAGGCGGCGGCCGTGCATTCGCTGGCCGGCAACTTCAAGGTGGAAAACTG
GAAACGCCGGCCGTATCGCGCGCCGCACCAGACGGCATCCGGCGTGGCGCTGGTCGGTGGCGGCCATGTGCCGCGGCCCG
GTGAAATTTCACTGGCGCATTGCGGCGTGCTGTTTCTCGATGAAATCGCCGAATTCGACCGCCGGGTACTCGACGTGCTG
CGCCAGCCGATGGAGTCCGGCATGATCAGCATCTCGCGCGCCGCCCGCCAGGCCGAGTTTCCAGCCCGTTTTCAATTGAT
CGCCGCCATGAATCCCTGTCCCTGCGGCTATCTGGGCCATGCCTCCGGCCGCTGCCGCTGCACCCCGGACGCCGTGCTGC
GCTACCATGGCCGACTGTCGGGTCCGCTGCTCGACCGCATTGATTTGCAAATCGAAGTGCCGGCCATGGCGCCAACAATG
CTGGGCGCGAAGGCGGTTGCCGGCGAAAGCACGGCGGCGATCGCGACGCGCGTGGCGGCCGCGTTTGCCGTGCAGCTGGC
GCGCCAGGGCAAGGCCAACCATCAGCTGAACAACCAGGAAATCGCGCTGCATTGCCAGCTCGATGCAGCTGGCGAGCAAC
TGCTGCATGGCGCCATGCTGCGCCTGCACTGGTCGGCACGCACTTATCACCGCGTATTGCGCGTGGCGCGCAGCATTGCC
GACCTGGCCGGCAGCGCCGCGATCGCACGTGCGCATGTTGCCGAGGCCATACAATACCGGCGCATATTGCATGTCGCCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.892

99.012

0.534
  comM Vibrio cholerae strain A1552

53.892

99.012

0.534
  comM Glaesserella parasuis strain SC1401

52.286

99.407

0.52
  comM Haemophilus influenzae Rd KW20

51.081

100

0.514
  comM Legionella pneumophila str. Paris

48.33

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.33

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.95

99.802

0.449