Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RAL92_RS00945 Genome accession   NZ_CP132337
Coordinates   193971..195467 (-) Length   498 a.a.
NCBI ID   WP_346841451.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain Tg_9B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 188971..200467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL92_RS00935 (RAL92_00935) - 189861..191837 (+) 1977 WP_074966970.1 methyl-accepting chemotaxis protein -
  RAL92_RS00940 (RAL92_00940) betT 191878..193857 (-) 1980 WP_074966971.1 choline BCCT transporter BetT -
  RAL92_RS00945 (RAL92_00945) comM 193971..195467 (-) 1497 WP_346841451.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RAL92_RS00950 (RAL92_00950) - 195505..195768 (-) 264 WP_044400771.1 accessory factor UbiK family protein -
  RAL92_RS00955 (RAL92_00955) glnK 196179..196517 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  RAL92_RS00960 (RAL92_00960) - 196552..197871 (+) 1320 WP_044400778.1 ammonium transporter -
  RAL92_RS00965 (RAL92_00965) - 197989..198414 (+) 426 WP_044400781.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RAL92_RS00970 (RAL92_00970) sutA 198490..198810 (+) 321 WP_044400784.1 transcriptional regulator SutA -
  RAL92_RS00975 (RAL92_00975) - 198868..199572 (-) 705 WP_346841452.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52774.68 Da        Isoelectric Point: 7.4045

>NTDB_id=868201 RAL92_RS00945 WP_346841451.1 193971..195467(-) (comM) [Pseudomonas otitidis strain Tg_9B]
MSLALVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSALLTSGFEFPLRRITLSLAPADLPKEGGR
FDLAVALGILAASGQVPAAALEQLECLGELALSGALRPVQGVLPAALAARAAGRALVVPRENAEEASLASGLTVFAVGHL
LELAAHLNGQTPLAPFQSQGLPLQAAPYPDLADVQGQLAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLEE
HEALEVAAIHSVASQSPLACWPQRPFRQPHHSASGPALVGGGSRPKPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIIIARANDRVRFPARFQLVAAMNPCPCGYLGDDTHRCRCTPEQIQRYRARLSGPLLDRIDLHLTVAREATHLGAPVSG
GLDSATAAGEVGRARRRQLARQGCANAFLDLSRLHQHCPLTPDDQHWLEQACERLGLSLRAAHRLIKVARTLADLADAPD
IQRHHLAEALQYRPAIQS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=868201 RAL92_RS00945 WP_346841451.1 193971..195467(-) (comM) [Pseudomonas otitidis strain Tg_9B]
ATGTCCCTGGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGGAGGCCCCTGCCGTCACGGTGGAGGCGCACCTGGCCAA
TGGCCTGCCGTCCCTGGCCCTGGTCGGCCTCCCGGAAACCGCCGTCAAGGAGAGCAAGGACCGCGTCCGCAGCGCCCTGC
TCACCAGCGGTTTCGAATTCCCCCTGCGGCGCATCACCCTCAGCCTTGCACCGGCCGATCTTCCCAAGGAAGGCGGACGC
TTCGACCTGGCCGTCGCCCTCGGCATCCTCGCGGCCAGCGGCCAGGTGCCCGCCGCAGCCCTGGAGCAGTTGGAGTGCCT
CGGCGAGCTGGCCCTGTCCGGTGCCCTGCGCCCGGTGCAGGGCGTGTTGCCCGCTGCGCTGGCGGCTCGTGCTGCCGGAC
GGGCGCTGGTGGTGCCCCGCGAGAACGCCGAGGAGGCCAGCCTGGCCAGCGGCCTGACGGTGTTCGCCGTGGGCCACCTG
CTGGAGCTGGCCGCCCACCTCAACGGCCAGACCCCGCTGGCACCCTTCCAGAGCCAGGGCCTGCCGCTGCAGGCCGCGCC
CTATCCCGATCTCGCTGACGTCCAGGGCCAACTGGCGGCCAAACGCGCGCTGCTGGTGGCAGCAGCCGGAGCCCACAACC
TGTTGCTGTCCGGCCCGCCCGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGCCTGCTGCCGCCGCTGGAGGAA
CACGAGGCCCTGGAAGTGGCCGCCATCCATTCGGTGGCCAGCCAATCGCCGCTGGCGTGCTGGCCCCAGCGTCCCTTCAG
GCAGCCTCACCACAGCGCGTCCGGCCCGGCCCTGGTGGGTGGGGGCAGTCGTCCGAAACCCGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTGGAGGTCCTCCGAGAGCCCCTGGAAAGT
GGCGAGATCATCATCGCCCGGGCCAACGACCGGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCCATGAACCCCTG
CCCCTGTGGCTACCTGGGCGACGACACCCACCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGGGCCCGGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACGGTCGCCCGCGAAGCCACACACCTGGGCGCGCCCGTCAGCGGT
GGGCTCGACAGTGCCACCGCCGCCGGGGAAGTCGGCCGAGCCCGGCGTCGGCAACTGGCTCGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGTCCCGGCTGCACCAGCACTGTCCGCTGACGCCCGACGACCAACATTGGCTGGAGCAGGCCTGCGAGC
GCCTCGGGTTGTCCCTGCGTGCCGCGCACCGGCTGATCAAGGTGGCCCGCACCCTCGCCGACCTGGCGGACGCGCCCGAC
ATCCAGCGCCACCACCTGGCCGAGGCCCTGCAATACCGGCCAGCGATCCAGTCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.539

99.799

0.564
  comM Vibrio campbellii strain DS40M4

56.452

99.598

0.562
  comM Glaesserella parasuis strain SC1401

54.98

100

0.554
  comM Haemophilus influenzae Rd KW20

54.653

100

0.554
  comM Legionella pneumophila str. Paris

50.297

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.297

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.46