Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RAA91_RS25960 Genome accession   NZ_CP132301
Coordinates   5266688..5268211 (+) Length   507 a.a.
NCBI ID   WP_038874711.1    Uniprot ID   -
Organism   Serratia marcescens strain F61211109     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5261688..5273211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAA91_RS25935 (RAA91_25950) - 5261889..5262815 (-) 927 WP_033636413.1 branched-chain amino acid transaminase -
  RAA91_RS25940 (RAA91_25955) ilvM 5262839..5263096 (-) 258 WP_038874702.1 acetolactate synthase 2 small subunit -
  RAA91_RS25945 (RAA91_25960) ilvG 5263093..5264739 (-) 1647 WP_038874705.1 acetolactate synthase 2 catalytic subunit -
  RAA91_RS25950 (RAA91_25965) ilvL 5264882..5264980 (-) 99 WP_013814970.1 ilv operon leader peptide -
  RAA91_RS25955 (RAA91_25970) - 5265114..5266346 (-) 1233 WP_038874708.1 MFS transporter -
  RAA91_RS25960 (RAA91_25975) comM 5266688..5268211 (+) 1524 WP_038874711.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RAA91_RS25965 (RAA91_25980) - 5268240..5268578 (-) 339 WP_019455272.1 DUF413 domain-containing protein -
  RAA91_RS25970 (RAA91_25985) hdfR 5268698..5269525 (+) 828 WP_038874715.1 HTH-type transcriptional regulator HdfR -
  RAA91_RS25975 (RAA91_25990) - 5269760..5270965 (-) 1206 WP_151522949.1 ISL3 family transposase -
  RAA91_RS25980 (RAA91_25995) - 5271045..5272165 (+) 1121 WP_230122533.1 IS3 family transposase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54500.82 Da        Isoelectric Point: 8.5092

>NTDB_id=868103 RAA91_RS25960 WP_038874711.1 5266688..5268211(+) (comM) [Serratia marcescens strain F61211109]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLILSADNAAEVGLIAQSRSHTARHL
LEVCAFLLGQGELPVAATPPAADTACDSADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
HEALESLAVASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRTSPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSQRKTQ
GESSELVRKRVQQARARQLERAGKVNALLSNREVERDCVLQTADAEFLETTLNALGLSVRAWQRILKVARTLADLAGDVE
LNRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=868103 RAA91_RS25960 WP_038874711.1 5266688..5268211(+) (comM) [Serratia marcescens strain F61211109]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGTCTGCCGGAAACCACGGTGAAAGAGGCGCGCGATCGGGTACGCAGTGCCCTGA
TCAACAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTTGCGCTGTCCGGCGCACTGCGCGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GGCAACTGATCCTCTCGGCGGACAACGCCGCCGAGGTCGGCCTGATCGCACAGTCGCGCTCCCATACCGCCCGGCACCTG
CTGGAAGTCTGCGCCTTTCTGCTCGGCCAGGGCGAACTGCCGGTGGCGGCCACGCCTCCCGCTGCGGACACCGCCTGCGA
CAGCGCCGATCTGCGCGACATCATCGGTCAGGAACAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCCGGCACCGGTAAAACCATGTTGGCCAGCCGCCTCACAGGCCTGCTGCCGCCGCTCACGGAG
CATGAGGCGCTGGAAAGCCTGGCGGTCGCCAGCTTGCAGCACCATATCCCCGCCGCCCTGCCATGGCGCCAGAGGCCGTT
TCGCGCACCGCATCACAGTGCATCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCCCGCCCCGGTGAGATCTCTATGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTACCGGAATTCGAGCGTAAGGTGCTGGATGCGCTGCGTGAGCCGCTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGTTGATCGCAGCAATGAACCC
CAGCCCGACCGGGCATTATCAGGGGTTGCACAATCGCACCTCACCGCAGCAGGTATTGCGCTATTTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTGCCTCCGGGTACGCTCAGTCAGCGGAAAACGCAG
GGAGAAAGCAGTGAGCTGGTGCGAAAACGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGTGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGCGAAGTGGAACGTGATTGCGTTCTGCAGACGGCAGACGCCGAGTTTTTGGAGACGACATTAAACG
CGCTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTTGCGCGCACGTTGGCGGATTTGGCGGGGGATGTTGAG
CTCAACAGGCGCCATCTCAGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAGCTGCATCGTAGTCTGGA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Glaesserella parasuis strain SC1401

65.68

100

0.657
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Vibrio cholerae strain A1552

65.139

99.014

0.645
  comM Vibrio campbellii strain DS40M4

64.542

99.014

0.639
  comM Legionella pneumophila str. Paris

50.602

98.225

0.497
  comM Legionella pneumophila strain ERS1305867

50.602

98.225

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.454