Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q9G97_RS13235 Genome accession   NZ_CP132194
Coordinates   3134035..3135678 (-) Length   547 a.a.
NCBI ID   WP_305899180.1    Uniprot ID   -
Organism   Psychrobacter sp. M13     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3129035..3140678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G97_RS13205 (Q9G97_13205) - 3129523..3129945 (+) 423 WP_305899175.1 hypothetical protein -
  Q9G97_RS13215 (Q9G97_13215) - 3130235..3130600 (-) 366 WP_305899176.1 hypothetical protein -
  Q9G97_RS13220 (Q9G97_13220) - 3130784..3131284 (+) 501 WP_305899177.1 DUF4385 domain-containing protein -
  Q9G97_RS13225 (Q9G97_13225) - 3131366..3132058 (+) 693 WP_305899178.1 phosphoglycolate phosphatase -
  Q9G97_RS13230 (Q9G97_13230) - 3132297..3134024 (+) 1728 WP_305899179.1 formate--tetrahydrofolate ligase -
  Q9G97_RS13235 (Q9G97_13235) comM 3134035..3135678 (-) 1644 WP_305899180.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q9G97_RS13240 (Q9G97_13240) - 3136041..3138530 (+) 2490 WP_305899181.1 penicillin acylase family protein -
  Q9G97_RS13245 (Q9G97_13245) hemN 3138729..3140306 (+) 1578 WP_305899182.1 oxygen-independent coproporphyrinogen III oxidase -

Sequence

Protein


Download         Length: 547 a.a.        Molecular weight: 59014.37 Da        Isoelectric Point: 8.5998

>NTDB_id=867552 Q9G97_RS13235 WP_305899180.1 3134035..3135678(-) (comM) [Psychrobacter sp. M13]
MSFAQVYTRSVVGLHAPQVIIEVHLSQGLPALTIVGLPEAAVRESKDRVRSAILNSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASDQLDAQVLSAFEFIGELALNGELRQVTGSLAVARAIKAEALVANKLLEKKSSEKKQVGIKTSVKKSS
IHEQDLVEPLLPPAQSRQLIVPSVNGAEASRVEGITVLAAQNLKAVCNHLQALAHPNGHLNTDNHLLETVAPSPTQQHAG
YKVDLADVKGQHHARRALEIAAAGGHSLLFTGPPGSGKTLMASRLPTILPDLSAEDALEVASTYSVADSDYDYGTRPFRQ
VHHTISAVALVGGGSRPKPGEITLANKGVLFLDELPEFDRAVLEVLRQPLEAKQITISRANSQMTFPANFQLVAAMNPCP
CGYDGDASGRCRCRPEQIRRYQDKLSGPLLDRIDLHITVPALPIADLQNAKAGESSEQVRMRVAAAHKRQLARQNKVNNE
LSPSELDEHVQLGKGEQQLLQLAQQRLNLSARGYHRVLRVARTIADLADSQGITSAHVSEALSYRSK

Nucleotide


Download         Length: 1644 bp        

>NTDB_id=867552 Q9G97_RS13235 WP_305899180.1 3134035..3135678(-) (comM) [Psychrobacter sp. M13]
ATGTCGTTTGCTCAGGTCTATACCCGATCGGTCGTTGGCTTGCATGCGCCGCAAGTGATTATAGAGGTACATCTATCACA
AGGTTTGCCCGCATTAACGATTGTGGGCTTACCAGAGGCGGCTGTACGCGAAAGTAAAGATCGGGTGCGCTCGGCGATTC
TGAATTCTGGTTTTCAATTTCCTAATCGTCGTTTGACGATCAATCTAGCGCCTGCTGACTTGCCCAAAGACGGTGCACGG
CTTGATTTACCTATTGCTATCGGTATTTTGGCAGCGAGTGATCAGCTTGACGCACAGGTATTATCAGCATTTGAGTTTAT
TGGTGAGTTGGCACTTAACGGTGAGCTACGCCAAGTCACAGGTAGCTTAGCCGTCGCACGAGCGATAAAAGCTGAGGCGC
TAGTGGCTAACAAGCTATTAGAAAAAAAATCGTCAGAAAAAAAGCAGGTGGGAATAAAGACATCTGTAAAAAAGTCATCT
ATCCACGAACAAGATCTGGTAGAGCCATTGCTACCGCCTGCGCAATCAAGGCAGCTAATAGTGCCCAGCGTCAATGGTGC
AGAGGCGAGTCGGGTTGAGGGTATAACAGTATTAGCTGCACAGAATCTAAAGGCGGTTTGCAATCATCTGCAAGCGTTAG
CTCATCCTAATGGTCATCTGAATACTGATAATCACCTGTTAGAGACGGTTGCTCCGAGTCCTACGCAGCAACATGCAGGC
TATAAAGTTGATCTTGCCGATGTCAAAGGTCAACATCACGCTCGGCGCGCATTAGAGATAGCGGCAGCAGGCGGGCATTC
GCTATTATTTACAGGGCCGCCTGGATCTGGCAAGACGCTAATGGCGTCGCGGCTACCGACGATATTGCCTGATCTAAGCG
CGGAGGATGCTTTAGAGGTCGCCAGCACTTATTCGGTCGCCGATAGTGATTATGACTATGGTACGCGCCCCTTTCGTCAA
GTTCATCATACGATATCAGCAGTAGCGCTAGTCGGTGGAGGCTCACGACCCAAACCTGGCGAGATAACGCTTGCCAATAA
GGGGGTTTTATTCCTTGATGAATTGCCTGAGTTTGATCGTGCGGTGTTAGAGGTATTGCGTCAGCCATTAGAGGCCAAGC
AGATCACTATTAGCCGTGCCAATTCACAAATGACCTTTCCTGCTAATTTTCAATTGGTTGCGGCGATGAATCCTTGCCCC
TGTGGCTATGATGGCGATGCTTCAGGACGCTGTCGCTGTCGTCCTGAGCAAATCAGACGCTACCAAGACAAGTTATCAGG
ACCACTACTAGATCGAATTGATCTACATATTACGGTGCCAGCACTACCGATTGCCGATCTACAAAACGCAAAAGCAGGGG
AGAGCTCAGAGCAAGTAAGGATGCGAGTCGCTGCTGCTCATAAGCGTCAGCTGGCAAGGCAGAACAAGGTCAATAATGAG
CTTAGTCCAAGCGAGCTGGATGAACATGTTCAGTTAGGCAAGGGCGAACAACAGTTATTACAGCTCGCTCAGCAGCGTCT
AAATCTGTCAGCGCGTGGCTATCATCGCGTGCTGCGAGTGGCGCGAACGATTGCTGATCTAGCAGATAGCCAAGGCATCA
CTAGCGCTCATGTATCAGAGGCACTGAGTTATCGCAGCAAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(453-545)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(244-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

47.928

100

0.486
  comM Glaesserella parasuis strain SC1401

46.474

100

0.47
  comM Legionella pneumophila str. Paris

46.727

100

0.47
  comM Legionella pneumophila strain ERS1305867

46.727

100

0.47
  comM Vibrio cholerae strain A1552

46.364

100

0.466
  comM Vibrio campbellii strain DS40M4

46.279

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.36

100

0.41