Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q9L40_RS11720 Genome accession   NZ_CP132190
Coordinates   1422619..1424142 (+) Length   507 a.a.
NCBI ID   WP_123012885.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1417619..1429142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS11705 (Q9L40_11705) ilvE 1419193..1420131 (-) 939 WP_305799030.1 branched-chain-amino-acid transaminase -
  Q9L40_RS11710 (Q9L40_11710) ilvM 1420143..1420427 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  Q9L40_RS11715 (Q9L40_11715) ilvG 1420439..1422085 (-) 1647 WP_305799029.1 acetolactate synthase 2 catalytic subunit -
  Q9L40_RS11720 (Q9L40_11720) comM 1422619..1424142 (+) 1524 WP_123012885.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q9L40_RS11725 (Q9L40_11725) - 1424237..1424842 (-) 606 WP_029627881.1 thiol:disulfide interchange protein DsbA/DsbL -
  Q9L40_RS11730 (Q9L40_11730) - 1424873..1425859 (-) 987 WP_000189621.1 serine/threonine protein kinase -
  Q9L40_RS11735 (Q9L40_11735) ccoG 1425907..1427331 (-) 1425 WP_305799028.1 cytochrome c oxidase accessory protein CcoG -
  Q9L40_RS11740 (Q9L40_11740) - 1427731..1427997 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55080.16 Da        Isoelectric Point: 8.6160

>NTDB_id=867512 Q9L40_RS11720 WP_123012885.1 1422619..1424142(+) (comM) [Vibrio cholerae strain DRC187]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARNKLESYEFIGELALSGEIRGVKGVLPAALAANQVQRCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQARDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARSHLAEALGYRAMDRLLKQLTTQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=867512 Q9L40_RS11720 WP_123012885.1 1422619..1424142(+) (comM) [Vibrio cholerae strain DRC187]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTGGTAGGATTGCCAGAAACCACAGTAAAAGAGTCGCGCGATAGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCAAAGCGCATTACGGTCAATTTAGCCCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAAATAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTTTTGCCTGCCGCGCTCGCGGCTAACCAAGTGCAGC
GCTGTTTGGTGGTGCCGCACAGTAATGGCGATCAGGCGGCTTTGGTCGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCAGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTGAGTCA
GGCGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTGGAAATCGCTGCGGCTGGCAATCACAACC
TATTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGTTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCAATGGAAACAGCCTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACACAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGGTTACTATTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTTGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCTCGCGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCGG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCAATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTTCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGTTTACTCAAACAGCTAACTACTCAAAATGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.014

100

0.99
  comM Vibrio campbellii strain DS40M4

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

66.535

100

0.667
  comM Glaesserella parasuis strain SC1401

64.453

100

0.651
  comM Legionella pneumophila str. Paris

50.806

97.83

0.497
  comM Legionella pneumophila strain ERS1305867

50.806

97.83

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434