Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q9L40_RS10150 Genome accession   NZ_CP132190
Coordinates   1088403..1088936 (-) Length   177 a.a.
NCBI ID   WP_113612467.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1083403..1093936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS10130 (Q9L40_10130) - 1083858..1084151 (-) 294 WP_001924595.1 hypothetical protein -
  Q9L40_RS10135 (Q9L40_10135) gspM 1084168..1084818 (-) 651 WP_084998353.1 type II secretion system protein GspM -
  Q9L40_RS10140 (Q9L40_10140) - 1084815..1086254 (-) 1440 WP_144391143.1 PilN domain-containing protein -
  Q9L40_RS10145 (Q9L40_10145) csrD 1086267..1088225 (-) 1959 WP_305898156.1 RNase E specificity factor CsrD -
  Q9L40_RS10150 (Q9L40_10150) ssb 1088403..1088936 (-) 534 WP_113612467.1 single-stranded DNA-binding protein Machinery gene
  Q9L40_RS10155 (Q9L40_10155) qstR 1089228..1089872 (+) 645 WP_071178319.1 LuxR C-terminal-related transcriptional regulator Regulator
  Q9L40_RS10160 (Q9L40_10160) galU 1090045..1090917 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Q9L40_RS10165 (Q9L40_10165) uvrA 1091073..1093895 (+) 2823 WP_305799150.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19742.95 Da        Isoelectric Point: 5.7570

>NTDB_id=867507 Q9L40_RS10150 WP_113612467.1 1088403..1088936(-) (ssb) [Vibrio cholerae strain DRC187]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTDIVVQGYNGIMQMLGGRTQQGGMPAQGGMNAPAQQSNWGQPQQPAKQHQPMQQSAPQQFS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=867507 Q9L40_RS10150 WP_113612467.1 1088403..1088936(-) (ssb) [Vibrio cholerae strain DRC187]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCTGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACTG
AATGGCACCGTGTGACTTTGTATGGAAAATTGGCTGAAGTTGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTCTACATT
GAAGGGCAGCTACAGACTCGCAAGTGGCAAGATCAAAATGGACAAGATCGTTATTCTACCGATATTGTCGTGCAAGGATA
CAATGGCATTATGCAGATGCTAGGTGGTCGCACACAACAAGGTGGAATGCCTGCTCAAGGCGGTATGAATGCTCCAGCAC
AGCAAAGTAACTGGGGACAACCGCAACAACCAGCGAAGCAGCATCAACCTATGCAACAATCAGCGCCTCAACAGTTCTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

95.48

100

0.955
  ssb Glaesserella parasuis strain SC1401

51.323

100

0.548
  ssb Neisseria meningitidis MC58

49.444

100

0.503
  ssb Neisseria gonorrhoeae MS11

49.444

100

0.503