Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   Q9L40_RS10155 Genome accession   NZ_CP132190
Coordinates   1089228..1089872 (+) Length   214 a.a.
NCBI ID   WP_071178319.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084228..1094872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS10140 (Q9L40_10140) - 1084815..1086254 (-) 1440 WP_144391143.1 PilN domain-containing protein -
  Q9L40_RS10145 (Q9L40_10145) csrD 1086267..1088225 (-) 1959 WP_305898156.1 RNase E specificity factor CsrD -
  Q9L40_RS10150 (Q9L40_10150) ssb 1088403..1088936 (-) 534 WP_113612467.1 single-stranded DNA-binding protein Machinery gene
  Q9L40_RS10155 (Q9L40_10155) qstR 1089228..1089872 (+) 645 WP_071178319.1 LuxR C-terminal-related transcriptional regulator Regulator
  Q9L40_RS10160 (Q9L40_10160) galU 1090045..1090917 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Q9L40_RS10165 (Q9L40_10165) uvrA 1091073..1093895 (+) 2823 WP_305799150.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24774.67 Da        Isoelectric Point: 9.6028

>NTDB_id=867508 Q9L40_RS10155 WP_071178319.1 1089228..1089872(+) (qstR) [Vibrio cholerae strain DRC187]
MQRANYARTIYLLTTQPKALHPSAQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDYAENVLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDIGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=867508 Q9L40_RS10155 WP_071178319.1 1089228..1089872(+) (qstR) [Vibrio cholerae strain DRC187]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACAACACAACCGAAGGCTTTACATCCCAGTGCTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCTGTGATTGAGCCAGAACGCTTATTACGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACTACGCGGAAAATGTCCTGATACGCCAGCAATTAGGCCCCCTTAAGCTTACCAGCCCCTACTTCGAA
ACTATTTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATTTGCTCACTTTTGGAAATCTCAAGGGTTTGTTTTACGC
CAATGAAGATATTGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTTAGTA
GCCAGTTACTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCGCGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCAAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCACATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.131

100

0.981
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.523
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523