Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K5554_RS03210 Genome accession   NZ_AP024619
Coordinates   607328..607759 (+) Length   143 a.a.
NCBI ID   WP_221039707.1    Uniprot ID   A0A9C7AZ71
Organism   Gelria sp. Kuro-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 602328..612759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5554_RS03180 (kuro4_06300) - 603024..603941 (+) 918 WP_221039701.1 selenium metabolism-associated LysR family transcriptional regulator -
  K5554_RS03185 (kuro4_06310) selD 603954..605000 (+) 1047 WP_221039702.1 selenide, water dikinase SelD -
  K5554_RS03190 (kuro4_06320) yedF 605032..605652 (+) 621 WP_221039703.1 sulfurtransferase-like selenium metabolism protein YedF -
  K5554_RS03195 (kuro4_06330) - 605684..606568 (+) 885 WP_221039704.1 mechanosensitive ion channel family protein -
  K5554_RS03200 (kuro4_06340) - 606613..606807 (+) 195 WP_221039705.1 DUF951 domain-containing protein -
  K5554_RS03205 (kuro4_06350) rpsF 607003..607335 (+) 333 WP_221039706.1 30S ribosomal protein S6 -
  K5554_RS03210 (kuro4_06360) ssbA 607328..607759 (+) 432 WP_221039707.1 single-stranded DNA-binding protein Machinery gene
  K5554_RS03215 (kuro4_06370) rpsR 607778..608008 (+) 231 WP_221039708.1 30S ribosomal protein S18 -
  K5554_RS03220 (kuro4_06380) - 608220..609425 (+) 1206 WP_221039709.1 GAF domain-containing sensor histidine kinase -
  K5554_RS03225 (kuro4_06390) - 609451..610143 (+) 693 WP_221039710.1 response regulator transcription factor -
  K5554_RS03230 (kuro4_06400) - 610296..611573 (+) 1278 WP_221039711.1 Glu/Leu/Phe/Val dehydrogenase -
  K5554_RS03235 (kuro4_06410) - 611567..612103 (+) 537 WP_221039712.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15681.50 Da        Isoelectric Point: 4.9533

>NTDB_id=86697 K5554_RS03210 WP_221039707.1 607328..607759(+) (ssbA) [Gelria sp. Kuro-4]
MLNRVILIGRLTRDPELRYTAAGVPVARFTLAVDRSFTNQQGQRETDFIDIVVWRRQAEICTNNLSKGRLVAVEGRLQIR
SYETQDGQKRRAAEVVADSVQFLDWPKAAVGAGGGQSSGSPSGEPSGEPSGTEVEYNLDDVPF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=86697 K5554_RS03210 WP_221039707.1 607328..607759(+) (ssbA) [Gelria sp. Kuro-4]
ATGCTTAACCGGGTTATCCTCATCGGCCGGCTGACGCGTGACCCCGAACTGAGGTACACGGCCGCCGGCGTTCCAGTAGC
CAGGTTCACACTTGCGGTCGATCGTTCCTTCACCAACCAACAGGGACAGCGGGAGACGGATTTTATCGATATCGTCGTTT
GGCGCCGCCAGGCTGAGATCTGCACCAATAACCTGAGCAAGGGACGGTTGGTAGCGGTCGAAGGCCGCCTGCAGATCCGC
TCCTACGAGACCCAGGACGGGCAGAAACGCCGGGCCGCGGAAGTGGTGGCCGATAGCGTTCAGTTCCTGGATTGGCCCAA
AGCGGCGGTGGGTGCCGGCGGGGGTCAGAGCAGCGGGAGCCCGAGTGGGGAGCCGAGCGGGGAACCCAGCGGCACCGAGG
TCGAGTATAATCTGGACGATGTCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.486

74.825

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

53.846

72.727

0.392
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.402

74.825

0.385
  ssb Neisseria gonorrhoeae MS11

40.31

90.21

0.364
  ssb Neisseria meningitidis MC58

40.31

90.21

0.364

Multiple sequence alignment