Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5621_RS18200 Genome accession   NZ_AP024618
Coordinates   4074557..4076077 (+) Length   506 a.a.
NCBI ID   WP_221049962.1    Uniprot ID   -
Organism   Shewanella carassii strain TUM17387     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4069557..4081077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5621_RS18180 (TUM17387_35560) ilvY 4070376..4071248 (+) 873 WP_025010072.1 HTH-type transcriptional activator IlvY -
  K5621_RS18185 (TUM17387_35570) - 4071351..4072682 (-) 1332 WP_221049960.1 hemolysin family protein -
  K5621_RS18190 (TUM17387_35580) - 4072907..4073710 (+) 804 WP_221049961.1 transporter substrate-binding domain-containing protein -
  K5621_RS18195 (TUM17387_35590) - 4073931..4074179 (-) 249 WP_100143438.1 hypothetical protein -
  K5621_RS18200 (TUM17387_35600) comM 4074557..4076077 (+) 1521 WP_221049962.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5621_RS18205 (TUM17387_35610) - 4076246..4076614 (+) 369 WP_083399806.1 hypothetical protein -
  K5621_RS18210 (TUM17387_35620) - 4076619..4077230 (-) 612 WP_342370130.1 response regulator -
  K5621_RS18215 (TUM17387_35630) - 4077205..4078959 (-) 1755 WP_221049963.1 PhnD/SsuA/transferrin family substrate-binding protein -
  K5621_RS18220 (TUM17387_35640) - 4079139..4080659 (+) 1521 WP_221049964.1 flavocytochrome c -
  K5621_RS18225 (TUM17387_35650) - 4080670..4081041 (+) 372 WP_221049965.1 cytochrome c3 family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54429.84 Da        Isoelectric Point: 8.4927

>NTDB_id=86689 K5621_RS18200 WP_221049962.1 4074557..4076077(+) (comM) [Shewanella carassii strain TUM17387]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYQQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSDT
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=86689 K5621_RS18200 WP_221049962.1 4074557..4076077(+) (comM) [Shewanella carassii strain TUM17387]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTTTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATCACTATCAATCTGGCACCGGCCGATCTGCCCAAACAGGGTGGACGT
TACGACCTTCCTATTGCCATTGGCATTCTGGCAGCATCCGGACAACTGCCACTGAAATCCCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGGATCCTGCCGGTGATCATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTATCAACAGTGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAGCAAACCCTGCCGGGGATAGTGCCGGGAACCGAATGGCTGGAACAATCCAA
GCCCCACTCGAGTGACTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAGACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCCACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCATACCAGCTCGGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCTGGCGAAA
TTTCACTGGCTCATCTGGGGGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCCTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTTATCGCCGC
CATGAATCCCAGCCCTTGTGGAGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATTGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACTTCAGATACG
GCGCAAGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTCGCTGCGGCCAGGGAACTACAACTCAGCCGCGCCGGCGTACT
TAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGTCCC
ATGGTCGAGCGACGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTAGCCAGTCTGCAACAGCTTTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

55.078

100

0.557
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

55.03

100

0.551
  comM Legionella pneumophila str. Paris

48.096

98.617

0.474
  comM Legionella pneumophila strain ERS1305867

48.096

98.617

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

100

0.435

Multiple sequence alignment