Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q1I86_RS23235 Genome accession   NZ_CP132010
Coordinates   4722657..4724177 (+) Length   506 a.a.
NCBI ID   WP_023261744.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Abortusovis isolate 405580R1_S46     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4717657..4729177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q1I86_RS23210 (Q1I86_23175) ilvE 4719214..4720143 (-) 930 WP_000208532.1 branched-chain-amino-acid transaminase -
  Q1I86_RS23215 (Q1I86_23180) ilvM 4720161..4720424 (-) 264 WP_322499483.1 acetolactate synthase 2 small subunit -
  Q1I86_RS23220 (Q1I86_23185) ilvG 4720421..4722067 (-) 1647 WP_001012561.1 acetolactate synthase 2 catalytic subunit -
  Q1I86_RS23225 (Q1I86_23190) ilvX 4722070..4722120 (-) 51 WP_192930503.1 peptide IlvX -
  Q1I86_RS23230 (Q1I86_23195) ilvL 4722207..4722305 (-) 99 WP_001311244.1 ilv operon leader peptide -
  Q1I86_RS23235 (Q1I86_23200) comM 4722657..4724177 (+) 1521 WP_023261744.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q1I86_RS23240 (Q1I86_23205) maoP 4724202..4724540 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  Q1I86_RS23245 (Q1I86_23210) hdfR 4724647..4725495 (+) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55031.22 Da        Isoelectric Point: 8.4852

>NTDB_id=866632 Q1I86_RS23235 WP_023261744.1 4722657..4724177(+) (comM) [Salmonella enterica subsp. enterica serovar Abortusovis isolate 405580R1_S46]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ENSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLQHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=866632 Q1I86_RS23235 WP_023261744.1 4722657..4724177(+) (comM) [Salmonella enterica subsp. enterica serovar Abortusovis isolate 405580R1_S46]
ATGTCACTGGCGATTGTTCATACCCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGTGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATCAGCAAAGAAGGATGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAA
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGCCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCAC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAGCGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATAGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCTCCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAACAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATATTGTGTTTTGCAGCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTGGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCACGTCAGCATTTGCAGGAAGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGTTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Vibrio cholerae strain A1552

58.614

99.802

0.585
  comM Glaesserella parasuis strain SC1401

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

57.54

99.605

0.573
  comM Legionella pneumophila str. Paris

47.686

98.221

0.468
  comM Legionella pneumophila strain ERS1305867

47.686

98.221

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

100

0.429