Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5631_RS16970 Genome accession   NZ_AP024617
Coordinates   3780027..3781547 (-) Length   506 a.a.
NCBI ID   WP_025889653.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17386     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3775027..3786547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5631_RS16945 (TUM17386_33370) phnC 3775361..3776188 (+) 828 WP_208171624.1 phosphonate ABC transporter ATP-binding protein -
  K5631_RS16950 (TUM17386_33380) phnE 3776182..3776985 (+) 804 WP_028780103.1 phosphonate ABC transporter, permease protein PhnE -
  K5631_RS16955 (TUM17386_33390) - 3777004..3778131 (+) 1128 WP_208171623.1 phosphonoacetaldehyde reductase -
  K5631_RS16960 (TUM17386_33400) phnX 3778119..3778928 (+) 810 WP_054744203.1 phosphonoacetaldehyde hydrolase -
  K5631_RS16965 (TUM17386_33410) - 3779031..3779927 (-) 897 WP_096142469.1 LysR substrate-binding domain-containing protein -
  K5631_RS16970 (TUM17386_33420) comM 3780027..3781547 (-) 1521 WP_025889653.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5631_RS16975 (TUM17386_33430) - 3781705..3782205 (-) 501 WP_025010079.1 hypothetical protein -
  K5631_RS16980 (TUM17386_33440) - 3782193..3782990 (-) 798 WP_144218193.1 winged helix-turn-helix domain-containing protein -
  K5631_RS16985 (TUM17386_33450) - 3783309..3783983 (+) 675 WP_221058324.1 hypothetical protein -
  K5631_RS16990 (TUM17386_33460) - 3783985..3784122 (+) 138 WP_221058326.1 hypothetical protein -
  K5631_RS16995 (TUM17386_33470) - 3784278..3784526 (+) 249 WP_156018595.1 hypothetical protein -
  K5631_RS17000 (TUM17386_33480) - 3784717..3785685 (+) 969 WP_208171621.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54441.90 Da        Isoelectric Point: 8.7098

>NTDB_id=86663 K5631_RS16970 WP_025889653.1 3780027..3781547(-) (comM) [Shewanella algae strain TUM17386]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=86663 K5631_RS16970 WP_025889653.1 3780027..3781547(-) (comM) [Shewanella algae strain TUM17386]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATCACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTAATTATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCATGGACAGCAAACTCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCGCACTCGAGTGATTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCCGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCCTGTGGTGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATTGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAAGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTCGCTGCGGCCAGGGAACTACAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment