Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5627_RS19645 Genome accession   NZ_AP024616
Coordinates   4439772..4441292 (+) Length   506 a.a.
NCBI ID   WP_208182189.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17384     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4434772..4446292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5627_RS19620 (TUM17384_38700) - 4435633..4436601 (-) 969 WP_221059177.1 ABC transporter substrate-binding protein -
  K5627_RS19625 (TUM17384_38710) - 4436791..4437039 (-) 249 WP_025010076.1 hypothetical protein -
  K5627_RS19630 (TUM17384_38720) - 4437195..4438010 (-) 816 WP_144226303.1 EAL domain-containing protein -
  K5627_RS19635 (TUM17384_38730) - 4438329..4439126 (+) 798 WP_025010078.1 winged helix-turn-helix domain-containing protein -
  K5627_RS19640 (TUM17384_38740) - 4439114..4439614 (+) 501 WP_054744206.1 hypothetical protein -
  K5627_RS19645 (TUM17384_38750) comM 4439772..4441292 (+) 1521 WP_208182189.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5627_RS19650 (TUM17384_38760) - 4441392..4442288 (+) 897 WP_096142469.1 LysR substrate-binding domain-containing protein -
  K5627_RS19655 (TUM17384_38770) phnX 4442391..4443200 (-) 810 WP_208159156.1 phosphonoacetaldehyde hydrolase -
  K5627_RS19660 (TUM17384_38780) - 4443188..4444315 (-) 1128 WP_208159157.1 phosphonoacetaldehyde reductase -
  K5627_RS19665 (TUM17384_38790) phnE 4444334..4445137 (-) 804 WP_028780103.1 phosphonate ABC transporter, permease protein PhnE -
  K5627_RS19670 (TUM17384_38800) phnC 4445131..4445958 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54455.92 Da        Isoelectric Point: 8.7098

>NTDB_id=86641 K5627_RS19645 WP_208182189.1 4439772..4441292(+) (comM) [Shewanella algae strain TUM17384]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIIPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=86641 K5627_RS19645 WP_208182189.1 4439772..4441292(+) (comM) [Shewanella algae strain TUM17384]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATTATCGCCGCCCGTCAAAGGGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCCGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAGCAAACCCTGCCGGGGATAATACCGGGAACCGAATGGCTGGAACAGTCCAA
GCCCCACTCGAGTGACTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCGGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAAA
TTTCACTGGCTCACCTGGGAGTACTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGCTTTCAACTCATCGCCGC
CATGAACCCCAGCCCCTGTGGTGATGCTGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAGGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTCGCTGCGGCCAGGGAACTACAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCTTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

100

0.431

Multiple sequence alignment