Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q4S45_RS00655 Genome accession   NZ_CP131935
Coordinates   155481..156998 (-) Length   505 a.a.
NCBI ID   WP_305508168.1    Uniprot ID   A0AAT9WFS0
Organism   Massilia sp. R2A-15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 150481..161998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4S45_RS00630 (Q4S45_00630) - 151285..152142 (-) 858 WP_305508160.1 alpha/beta hydrolase -
  Q4S45_RS00635 (Q4S45_00635) - 152142..152486 (-) 345 WP_305508162.1 DUF1840 domain-containing protein -
  Q4S45_RS00640 (Q4S45_00640) - 152576..154138 (-) 1563 WP_305508164.1 hypothetical protein -
  Q4S45_RS00645 (Q4S45_00645) - 154135..154872 (-) 738 WP_305508166.1 ABC transporter ATP-binding protein -
  Q4S45_RS00650 (Q4S45_00650) - 154898..155431 (-) 534 WP_308633165.1 hypothetical protein -
  Q4S45_RS00655 (Q4S45_00655) comM 155481..156998 (-) 1518 WP_305508168.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q4S45_RS00660 (Q4S45_00660) - 157134..157607 (-) 474 WP_305508170.1 RES family NAD+ phosphorylase -
  Q4S45_RS00665 (Q4S45_00665) - 157604..158200 (-) 597 WP_305508172.1 antitoxin Xre-like helix-turn-helix domain-containing protein -
  Q4S45_RS00670 (Q4S45_00670) - 158352..158807 (-) 456 WP_305508175.1 hypothetical protein -
  Q4S45_RS00675 (Q4S45_00675) - 158956..159501 (+) 546 WP_305508177.1 tetratricopeptide repeat protein -
  Q4S45_RS00680 (Q4S45_00680) - 159519..159881 (+) 363 WP_305508179.1 translation initiation factor Sui1 -
  Q4S45_RS00685 (Q4S45_00685) - 159919..160365 (-) 447 WP_305508181.1 hypothetical protein -
  Q4S45_RS00690 (Q4S45_00690) - 160398..160712 (-) 315 WP_305508183.1 EthD family reductase -
  Q4S45_RS00695 (Q4S45_00695) - 160909..161163 (-) 255 WP_305508185.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54917.05 Da        Isoelectric Point: 8.6806

>NTDB_id=866366 Q4S45_RS00655 WP_305508168.1 155481..156998(-) (comM) [Massilia sp. R2A-15]
MSLAVLRSRALAGMEAPPVSVEVHLANGLPSFTIVGLPDTEVRESKDRVRAALLNAGFDIPNRRITVNLAPADLPKESGR
FDLPIALGILAASRQIPDRELDQYEFAGELSLSGELRPIRGALAMTFAMHRCREHAARGFILPMANGDEAALVADAVIYP
AETLLQVCAHLNAGDPATRLARHRNKAAIAVPAYADLSDVKGQQHAKRAMEVAAAGNHSLLMVGPPGAGKTMLASRFVGL
LPPMTEEEALESAAVQSLTRGFSAASWKMRPYRSPHHTTSGVALVGGGAMPRPGEISLAHCGVLFLDELPEFDRRVLEVL
RQPMESGSVTISRAAHQADFPARFQLLAAMNPCPCGFLGHASGKCRCTPDSVARYQDRISGPLLDRIDMQIDVAAMAPAA
LSAEADGESSAEIARRVEHAFRLQLQRQDKSNQRLTTREIDRHCKLDAAGDKLLRETMLQWHWSARAYHRVLKVARTIAD
LAGTQRIARAHVAEAIQYRRSLRER

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=866366 Q4S45_RS00655 WP_305508168.1 155481..156998(-) (comM) [Massilia sp. R2A-15]
ATGAGTCTTGCAGTATTGCGTAGCCGCGCGCTGGCCGGCATGGAAGCGCCGCCTGTCAGCGTCGAAGTACACTTGGCAAA
CGGGCTCCCCAGCTTCACCATCGTCGGTCTTCCCGACACCGAAGTGCGCGAATCGAAGGACCGCGTGCGCGCCGCGTTGC
TCAACGCCGGCTTCGATATCCCCAACCGCCGCATCACCGTCAATCTCGCGCCGGCCGATTTGCCGAAGGAGTCCGGCCGC
TTCGATCTGCCGATTGCGCTCGGCATCCTCGCCGCCTCGCGCCAGATTCCCGACCGCGAACTGGATCAATACGAATTCGC
CGGCGAGCTGTCCCTGTCCGGCGAGTTGCGGCCCATCCGCGGCGCGCTGGCGATGACGTTCGCGATGCACCGCTGCCGCG
AGCATGCGGCCCGCGGCTTCATCCTGCCAATGGCAAACGGCGACGAGGCCGCGCTGGTGGCCGACGCCGTTATCTATCCC
GCCGAAACGCTGCTGCAGGTCTGCGCCCACTTGAATGCCGGCGACCCCGCCACCCGCCTCGCACGGCATCGCAACAAGGC
CGCCATCGCTGTTCCGGCCTATGCCGACCTGTCCGACGTGAAGGGCCAGCAGCACGCCAAGCGCGCGATGGAAGTCGCCG
CCGCCGGCAACCACAGTCTTCTGATGGTTGGCCCGCCGGGCGCGGGCAAGACCATGCTGGCGTCGCGCTTCGTCGGCCTG
CTGCCGCCGATGACGGAGGAAGAGGCGTTGGAATCGGCGGCCGTGCAGTCGCTCACGCGCGGCTTTTCCGCGGCCAGCTG
GAAGATGCGGCCGTATCGAAGCCCCCACCACACCACCTCGGGCGTCGCGCTGGTCGGTGGCGGCGCCATGCCGCGCCCCG
GCGAAATCTCGCTGGCCCATTGCGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTTCGACCGCCGCGTGCTCGAAGTGCTG
CGCCAGCCGATGGAGTCCGGCAGCGTGACGATCTCGCGCGCCGCGCATCAGGCCGACTTTCCAGCGCGCTTCCAGCTGCT
CGCGGCGATGAATCCCTGCCCCTGCGGCTTCCTCGGCCACGCCTCCGGCAAGTGCCGCTGCACACCGGACAGCGTCGCGC
GATACCAGGACCGCATCTCCGGCCCCCTGCTCGACCGCATCGACATGCAGATCGATGTGGCGGCGATGGCGCCGGCGGCC
TTGAGCGCGGAGGCCGACGGCGAGTCGAGCGCGGAGATTGCGCGGCGCGTGGAGCACGCGTTTCGGTTGCAGCTGCAGCG
CCAGGACAAGTCGAACCAGCGCCTCACCACGCGCGAGATCGACCGTCACTGCAAGCTCGATGCGGCCGGCGACAAGCTGC
TGCGCGAGACCATGCTGCAGTGGCACTGGTCGGCGCGCGCCTATCACCGGGTGCTCAAGGTGGCGCGCACCATCGCCGAC
CTGGCCGGCACCCAGCGCATCGCGCGGGCGCACGTGGCCGAGGCGATCCAGTACCGGCGCAGTCTGCGAGAACGATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-499)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.894

99.208

0.525
  comM Vibrio campbellii strain DS40M4

52.695

99.208

0.523
  comM Glaesserella parasuis strain SC1401

52.381

99.802

0.523
  comM Haemophilus influenzae Rd KW20

51.081

100

0.515
  comM Legionella pneumophila str. Paris

50.394

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.394

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.758

100

0.471