Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5632_RS19730 Genome accession   NZ_AP024615
Coordinates   4480214..4481734 (+) Length   506 a.a.
NCBI ID   WP_025889653.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17383     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4475214..4486734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5632_RS19705 (TUM17383_38840) - 4476075..4477043 (-) 969 WP_221055545.1 ABC transporter substrate-binding protein -
  K5632_RS19710 (TUM17383_38850) - 4477233..4477481 (-) 249 WP_221055546.1 hypothetical protein -
  K5632_RS19715 (TUM17383_38860) - 4477637..4478452 (-) 816 WP_221055547.1 EAL domain-containing protein -
  K5632_RS19720 (TUM17383_38870) - 4478771..4479568 (+) 798 WP_221055548.1 winged helix-turn-helix domain-containing protein -
  K5632_RS19725 (TUM17383_38880) - 4479556..4480056 (+) 501 WP_221055549.1 hypothetical protein -
  K5632_RS19730 (TUM17383_38890) comM 4480214..4481734 (+) 1521 WP_025889653.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5632_RS19735 (TUM17383_38900) - 4481834..4482730 (+) 897 WP_144134912.1 LysR substrate-binding domain-containing protein -
  K5632_RS19740 (TUM17383_38910) phnX 4482833..4483642 (-) 810 WP_144438920.1 phosphonoacetaldehyde hydrolase -
  K5632_RS19745 (TUM17383_38920) - 4483630..4484757 (-) 1128 WP_144226307.1 phosphonoacetaldehyde reductase -
  K5632_RS19750 (TUM17383_38930) phnE 4484776..4485579 (-) 804 WP_045283250.1 phosphonate ABC transporter, permease protein PhnE -
  K5632_RS19755 (TUM17383_38940) phnC 4485573..4486400 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54441.90 Da        Isoelectric Point: 8.7098

>NTDB_id=86617 K5632_RS19730 WP_025889653.1 4480214..4481734(+) (comM) [Shewanella algae strain TUM17383]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=86617 K5632_RS19730 WP_025889653.1 4480214..4481734(+) (comM) [Shewanella algae strain TUM17383]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTAGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGCATTCTGGCAGCATCCGGACAACTGCCACTGAAATCCCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATTATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAGCAAACCCTGCCGGGGATAGTGCCGGGAACCGAATGGCTGGAACAGTCCAA
GCCGCACTCGAGTGATTGCCTGTCGGAAGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCTCCC
ATGAGTTATGAAGAGGCGCTGGAAGTAGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGACCGTTTCGCGCTCCGCACCACACCAGCTCCGCCATATCTTTGGTGGGAGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTCGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCCTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAGCTCATCGCCGC
CATGAACCCCAGCCCCTGTGGTGATGCAGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCTGGCCCTTTCATTGACAGATTCGACCTCACCATAGAAGTGCCCAAACTCCCGCCCGGCGCCTTGACCTCAGAGGCA
GCGCAAGGTGAAACCAGTGAGCAGATTGCCGCCAGAGTCGCTGCGGCCAGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAAGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGATCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment