Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q7W82_RS00945 Genome accession   NZ_CP131914
Coordinates   226076..227599 (+) Length   507 a.a.
NCBI ID   WP_242161515.1    Uniprot ID   A0AAU8I5R1
Organism   Xanthomonas indica strain PPL560     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 221076..232599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W82_RS00925 (Q7W82_00925) speA 221992..223881 (-) 1890 WP_242161518.1 arginine decarboxylase -
  Q7W82_RS00930 (Q7W82_00930) speE 224106..224957 (+) 852 WP_242161517.1 polyamine aminopropyltransferase -
  Q7W82_RS00935 (Q7W82_00935) - 225278..225616 (-) 339 WP_010341856.1 P-II family nitrogen regulator -
  Q7W82_RS00940 (Q7W82_00940) - 225793..226062 (+) 270 WP_242161516.1 accessory factor UbiK family protein -
  Q7W82_RS00945 (Q7W82_00945) comM 226076..227599 (+) 1524 WP_242161515.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q7W82_RS00950 (Q7W82_00950) - 228070..229227 (-) 1158 WP_353949503.1 lipocalin-like domain-containing protein -
  Q7W82_RS00955 (Q7W82_00955) - 229224..230312 (-) 1089 WP_242161513.1 carotenoid 1,2-hydratase -
  Q7W82_RS00960 (Q7W82_00960) - 230716..231558 (-) 843 WP_242161512.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53858.55 Da        Isoelectric Point: 8.5214

>NTDB_id=866113 Q7W82_RS00945 WP_242161515.1 226076..227599(+) (comM) [Xanthomonas indica strain PPL560]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAQAGRTLIVPADNGAEAALAQHVQAFTARTL
LEVCGLLNGSKTLPAATALPAVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALESAAIASVSGRGVDPARWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSEDAVRRYRARISGPLLDRIDLHVDVPRLPPQALRADAPP
GETSAAVRARVEQARQRQQARAGRPNGQLGHGETLRDCRLQPRDEALLEHAIERLRLSARSLHRILRVARTIADLDTSDA
IATAHLTEAIAYRQLDRGEPAPVARSA

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=866113 Q7W82_RS00945 WP_242161515.1 226076..227599(+) (comM) [Xanthomonas indica strain PPL560]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTCTCCGG
CGGCCTGCCGGCCACGCAGATCGTCGGCCTGCCCGAGGCAGCGGTGCGCGAATCGCGCGATCGCGTACGCGCCGCCCTGC
TCTGTGCGCAGTACGAATTCCCGGCACGGCGGATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAGGGCGGCCGC
TTCGATCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGCCAGCTCGACCCGCAGGTGCTCGGCCAGTACGAATTCCT
CGGCGAACTGGCCCTGACCGGCGAATTGCGCCCGGTCGACGGCGTCCTGCCGGCCGCGCTGGCCGCGGCACAGGCCGGAC
GCACCCTGATCGTGCCGGCCGACAACGGCGCCGAGGCCGCGCTGGCGCAACACGTGCAGGCGTTCACCGCGCGCACCCTG
CTGGAGGTCTGCGGGTTGCTCAACGGCAGCAAGACCCTGCCCGCGGCGACGGCGCTGCCGGCCGTCGCCGCGCCCTTTCC
CGACCTGAGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCGGCCGGACATCACCACCTGCTGC
TGATCGGCAGCCCCGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAAGCCGAG
GCGCTGGAGAGCGCAGCCATCGCCTCGGTCAGCGGCCGCGGCGTGGATCCGGCGCGCTGGCGGCAACGCCCCTACCGGGC
GCCGCATCACACCGCCAGCGCGGTGTCGCTGGTCGGTGGCGGCACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCACC
ACGGCGTGCTGTTCCTGGACGAGCTGCCCGAGTGGAACCGGCACGCGCTGGAAGTGTTGCGCGAGCCGCTGGAGTCGGGC
CAGGTGACGGTGTCGCGCGCGGCGCGCAGTGCCGAGTTTCCTGCGCGCTTCCAGTTGGTGGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGACCCCAGCGGCCGCTGCCGCTGCAGCGAGGACGCGGTGCGGCGCTATCGCGCGCGCATCTCCG
GCCCACTGCTGGACCGCATCGACCTGCACGTGGACGTGCCGCGGCTCCCGCCACAGGCGCTGCGTGCCGATGCGCCGCCC
GGCGAAACCAGCGCCGCCGTGCGCGCGCGGGTGGAGCAGGCGCGGCAACGCCAGCAGGCCCGCGCCGGCCGGCCCAACGG
TCAGCTCGGCCACGGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCGCTGCTGGAACATGCGATCGAGC
GCCTGCGGCTATCGGCGCGCTCGCTGCATCGGATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGACACCAGCGACGCC
ATCGCCACCGCGCACCTGACCGAGGCCATCGCCTACCGGCAACTGGATCGTGGGGAGCCGGCACCGGTAGCGCGCAGCGC
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.311

98.422

0.544
  comM Haemophilus influenzae Rd KW20

54.365

99.408

0.54
  comM Vibrio campbellii strain DS40M4

53.984

99.014

0.535
  comM Glaesserella parasuis strain SC1401

52.976

99.408

0.527
  comM Legionella pneumophila str. Paris

50.595

99.408

0.503
  comM Legionella pneumophila strain ERS1305867

50.595

99.408

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.452