Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B6N23_RS09495 Genome accession   NZ_CP131913
Coordinates   1987203..1988705 (-) Length   500 a.a.
NCBI ID   WP_305498173.1    Uniprot ID   -
Organism   Halomonas alkalicola strain CICC 11012s     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1982203..1993705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6N23_RS09475 (B6N23_09480) - 1982552..1982965 (-) 414 WP_302140230.1 PaaI family thioesterase -
  B6N23_RS09480 (B6N23_09485) - 1983105..1985279 (-) 2175 WP_305498168.1 malate synthase G -
  B6N23_RS09485 (B6N23_09490) - 1985515..1986501 (+) 987 WP_305498171.1 alpha/beta hydrolase -
  B6N23_RS09490 (B6N23_09495) - 1986498..1986995 (+) 498 WP_302140224.1 hypothetical protein -
  B6N23_RS09495 (B6N23_09500) comM 1987203..1988705 (-) 1503 WP_305498173.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B6N23_RS09500 (B6N23_09505) - 1988772..1989098 (-) 327 WP_302140220.1 accessory factor UbiK family protein -
  B6N23_RS09505 (B6N23_09510) - 1989378..1989716 (+) 339 WP_305498176.1 P-II family nitrogen regulator -
  B6N23_RS09510 (B6N23_09515) - 1989744..1990994 (+) 1251 WP_305498178.1 ammonium transporter -
  B6N23_RS09515 (B6N23_09520) glnK 1991142..1991480 (+) 339 WP_110069051.1 P-II family nitrogen regulator -
  B6N23_RS09520 (B6N23_09525) - 1991574..1992350 (-) 777 WP_305498181.1 ferredoxin--NADP reductase -
  B6N23_RS09525 (B6N23_09530) - 1992511..1993437 (+) 927 WP_119023101.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53464.84 Da        Isoelectric Point: 8.3964

>NTDB_id=866101 B6N23_RS09495 WP_305498173.1 1987203..1988705(-) (comM) [Halomonas alkalicola strain CICC 11012s]
MTLAIVHTRAGLGLEAPEVQVEVHLANGLPGMTLVGLPEAAVKESRERVRSALVNAGFDYPLRRITLNLAPADLPKEGGR
FDLPIALGLLLASGQLPPEALADIESVGELALDGGLRPITGMLPLALATRRARRRLIVPRANAEEAALAGDLEVLPADHL
LDVVAHLLGQVPIAPHRLASPPEAATSLPDLAEVRGQYQARRALEVAAAGSHNLLFAGPPGTGKTMLASRLPGILPPLTE
EEALEVAAVRSVSGLPLAAEWGRRPFRAPHHTASAVALVGGGSKPRPGEISLAHHGVLFLDELPEFSRHVLEVMREPMES
GQIHIARASHQRRFPARFQLVAAMNPCPCGHLGDPRQACHCTAAQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAATT
GESSAIVRRRGMAARERQLARGALNAHLAGRALEAACDLASADRAWLAQVLERLRLSARAYHRVLRVALTLADLAGEPKP
AREQLIEAIGYRQLDRLLKG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=866101 B6N23_RS09495 WP_305498173.1 1987203..1988705(-) (comM) [Halomonas alkalicola strain CICC 11012s]
ATGACGCTGGCGATCGTCCATACCCGTGCGGGCCTCGGCCTCGAGGCCCCCGAGGTGCAGGTGGAGGTGCATCTGGCCAA
TGGCCTGCCGGGGATGACCCTGGTGGGACTGCCCGAGGCCGCCGTGAAGGAGAGCCGCGAGCGGGTGCGCAGCGCCCTGG
TCAACGCCGGCTTCGACTACCCCCTGCGCCGCATCACCCTCAACCTGGCTCCCGCCGACCTGCCCAAGGAGGGTGGGCGC
TTCGACCTGCCCATCGCCCTGGGACTGCTGCTGGCCTCGGGGCAGCTGCCCCCGGAGGCCCTGGCGGACATCGAGAGCGT
CGGCGAGCTGGCCCTGGACGGTGGCCTGCGCCCGATCACCGGTATGCTGCCCCTGGCCCTGGCCACCCGCCGTGCTAGGC
GGCGGCTGATCGTGCCCCGGGCCAACGCCGAGGAGGCGGCGCTCGCCGGCGACCTCGAGGTGCTGCCCGCCGACCATCTG
CTGGACGTGGTCGCCCATCTGCTGGGCCAGGTCCCCATCGCGCCGCACCGGCTGGCGTCTCCGCCGGAGGCGGCGACATC
GCTGCCCGATCTCGCCGAGGTGCGCGGCCAGTACCAGGCGCGCCGCGCCCTGGAGGTGGCCGCCGCGGGCTCCCACAACC
TGCTCTTCGCCGGCCCGCCGGGCACTGGCAAGACCATGCTGGCCAGCCGCCTGCCGGGCATCCTGCCGCCGCTGACCGAG
GAGGAGGCGCTGGAGGTGGCGGCGGTGCGCTCGGTGAGCGGCCTGCCGCTGGCCGCCGAGTGGGGTCGCCGCCCCTTTCG
GGCGCCGCACCATACCGCCAGCGCCGTGGCCCTGGTAGGCGGCGGCTCGAAGCCGCGACCCGGAGAGATCTCGCTGGCCC
ACCACGGGGTGCTGTTCCTCGACGAGCTGCCGGAGTTCTCGCGCCACGTGCTGGAGGTGATGCGCGAGCCCATGGAATCG
GGCCAGATCCATATCGCCCGGGCCAGCCACCAGCGCCGCTTTCCGGCTCGCTTCCAGCTGGTGGCGGCCATGAATCCTTG
CCCCTGCGGCCATCTGGGGGACCCGCGGCAGGCCTGCCACTGCACCGCGGCCCAGATCCAGCGCTACCAGGCGCGGCTCT
CCGGGCCGCTGCTCGATCGCATCGACCTGCAGGTGGAGGTGCCGGCGCTGCCGCCGGAGCAGCTCACGGCGGCGACGACG
GGGGAGTCCTCGGCGATCGTCCGCCGGCGGGGGATGGCCGCGCGGGAACGGCAGCTGGCGCGGGGGGCGCTCAATGCCCA
CCTGGCGGGGCGGGCGCTGGAGGCGGCCTGCGACCTCGCCAGCGCCGACCGCGCCTGGCTGGCGCAGGTGCTGGAGCGGC
TCAGGCTCTCGGCGCGGGCCTACCACCGGGTGCTGCGGGTGGCGCTGACCCTGGCCGACCTGGCCGGCGAGCCGAAGCCG
GCCCGGGAGCAGCTGATCGAGGCGATCGGCTATCGGCAGCTGGATCGGCTGCTCAAGGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.578

100

0.558
  comM Vibrio cholerae strain A1552

54.98

100

0.552
  comM Haemophilus influenzae Rd KW20

54.028

100

0.55
  comM Glaesserella parasuis strain SC1401

53.543

100

0.544
  comM Legionella pneumophila str. Paris

50.199

100

0.504
  comM Legionella pneumophila strain ERS1305867

50.199

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.654

100

0.474