Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5638_RS20430 Genome accession   NZ_AP024614
Coordinates   4587281..4588801 (+) Length   506 a.a.
NCBI ID   WP_144134911.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17382     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4582281..4593801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5638_RS20405 (TUM17382_40230) - 4583142..4584140 (-) 999 WP_186299546.1 ABC transporter substrate-binding protein -
  K5638_RS20410 (TUM17382_40240) - 4584300..4584548 (-) 249 WP_025010076.1 hypothetical protein -
  K5638_RS20415 (TUM17382_40250) - 4584704..4585519 (-) 816 WP_144134907.1 EAL domain-containing protein -
  K5638_RS20420 (TUM17382_40260) - 4585838..4586635 (+) 798 WP_221060318.1 winged helix-turn-helix domain-containing protein -
  K5638_RS20425 (TUM17382_40270) - 4586623..4587123 (+) 501 WP_025010079.1 hypothetical protein -
  K5638_RS20430 (TUM17382_40280) comM 4587281..4588801 (+) 1521 WP_144134911.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5638_RS20435 (TUM17382_40290) - 4588901..4589797 (+) 897 WP_144134912.1 LysR substrate-binding domain-containing protein -
  K5638_RS20440 (TUM17382_40300) phnX 4589900..4590709 (-) 810 WP_144134914.1 phosphonoacetaldehyde hydrolase -
  K5638_RS20445 (TUM17382_40310) - 4590697..4591824 (-) 1128 WP_044735374.1 phosphonoacetaldehyde reductase -
  K5638_RS20450 (TUM17382_40320) phnE 4591843..4592646 (-) 804 WP_028780103.1 phosphonate ABC transporter, permease protein PhnE -
  K5638_RS20455 (TUM17382_40330) phnC 4592640..4593467 (-) 828 WP_221060319.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54425.84 Da        Isoelectric Point: 8.8632

>NTDB_id=86593 K5638_RS20430 WP_144134911.1 4587281..4588801(+) (comM) [Shewanella algae strain TUM17382]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDSLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=86593 K5638_RS20430 WP_144134911.1 4587281..4588801(+) (comM) [Shewanella algae strain TUM17382]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTAATTATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCATGGACAGCAAACTCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCGCACTCGAGTGATTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATCATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGCATGGCCACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCGGCCATCTCTTTGGTGGGTGGAGGCTCGATTCCCAAACCCGGCGAAA
TTTCACTGGCTCACCTGGGGGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACAGCCTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTTATCGCCGC
CATGAACCCCAGCCCTTGTGGTGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATTGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACTTCAGAGGCG
GCGCAAGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTCGCTGCGGCCAGGGAACTACAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.016

100

0.561
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.424

100

0.555
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment