Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5628_RS19785 Genome accession   NZ_AP024613
Coordinates   4458432..4459952 (+) Length   506 a.a.
NCBI ID   WP_208147892.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17379     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4453432..4464952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5628_RS19760 (TUM17379_38990) - 4454286..4455362 (-) 1077 WP_208147887.1 ABC transporter substrate-binding protein -
  K5628_RS19765 (TUM17379_39000) - 4455444..4455692 (-) 249 WP_025010076.1 hypothetical protein -
  K5628_RS19770 (TUM17379_39010) - 4455848..4456663 (-) 816 WP_144226303.1 EAL domain-containing protein -
  K5628_RS19775 (TUM17379_39020) - 4456988..4457785 (+) 798 WP_208147889.1 winged helix-turn-helix domain-containing protein -
  K5628_RS19780 (TUM17379_39030) - 4457773..4458273 (+) 501 WP_208147891.1 hypothetical protein -
  K5628_RS19785 (TUM17379_39040) comM 4458432..4459952 (+) 1521 WP_208147892.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5628_RS19790 (TUM17379_39050) - 4460052..4460948 (+) 897 WP_208123885.1 LysR substrate-binding domain-containing protein -
  K5628_RS19795 (TUM17379_39070) phnX 4461051..4461860 (-) 810 WP_208147893.1 phosphonoacetaldehyde hydrolase -
  K5628_RS19800 (TUM17379_39080) - 4461848..4462975 (-) 1128 WP_208147894.1 phosphonoacetaldehyde reductase -
  K5628_RS19805 (TUM17379_39090) phnE 4462994..4463797 (-) 804 WP_208147895.1 phosphonate ABC transporter, permease protein PhnE -
  K5628_RS19810 (TUM17379_39100) phnC 4463791..4464618 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54481.92 Da        Isoelectric Point: 8.7111

>NTDB_id=86567 K5628_RS19785 WP_208147892.1 4458432..4459952(+) (comM) [Shewanella algae strain TUM17379]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPH
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=86567 K5628_RS19785 WP_208147892.1 4458432..4459952(+) (comM) [Shewanella algae strain TUM17379]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGCATTCTGGCAGCATCCGGACAACTGCCACTGAAATCCCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATTATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAGCAAACCCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCCAA
GCCGCACTCGAGTGACTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCAC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCCGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCCTGTGGTGATGCCGGCCCGGGAAGCCGTGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAGGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAGTTGCAACTCAGCCGCGCCGGCGTACT
CAATAGCCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCACGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAAGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

100

0.431

Multiple sequence alignment