Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5624_RS19715 Genome accession   NZ_AP024612
Coordinates   4441813..4443333 (+) Length   506 a.a.
NCBI ID   WP_096142468.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17378     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4436813..4448333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5624_RS19690 (TUM17378_38460) - 4437674..4438642 (-) 969 WP_186295232.1 ABC transporter substrate-binding protein -
  K5624_RS19695 (TUM17378_38470) - 4438832..4439080 (-) 249 WP_025010076.1 hypothetical protein -
  K5624_RS19700 (TUM17378_38480) - 4439236..4440051 (-) 816 WP_096142467.1 EAL domain-containing protein -
  K5624_RS19705 (TUM17378_38490) - 4440370..4441167 (+) 798 WP_025010078.1 winged helix-turn-helix domain-containing protein -
  K5624_RS19710 (TUM17378_38500) - 4441155..4441655 (+) 501 WP_025010079.1 hypothetical protein -
  K5624_RS19715 (TUM17378_38510) comM 4441813..4443333 (+) 1521 WP_096142468.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5624_RS19720 (TUM17378_38520) - 4443508..4443876 (+) 369 WP_051541835.1 hypothetical protein -
  K5624_RS19725 (TUM17378_38530) caiA 4443951..4445087 (-) 1137 WP_028780099.1 crotonobetainyl-CoA dehydrogenase -
  K5624_RS19730 (TUM17378_38540) - 4445436..4446083 (+) 648 WP_144159995.1 MBL fold metallo-hydrolase -
  K5624_RS19735 (TUM17378_38550) - 4446131..4447450 (-) 1320 WP_028780097.1 MFS transporter -
  K5624_RS19740 (TUM17378_38560) - 4447808..4448095 (-) 288 WP_025010089.1 4Fe-4S dicluster domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54427.87 Da        Isoelectric Point: 8.7098

>NTDB_id=86543 K5624_RS19715 WP_096142468.1 4441813..4443333(+) (comM) [Shewanella algae strain TUM17378]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSDA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=86543 K5624_RS19715 WP_096142468.1 4441813..4443333(+) (comM) [Shewanella algae strain TUM17378]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTAGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TAAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAGGGTGGACGT
TACGACCTTCCTATTGCCATTGGCATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATCATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCCGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAACAAACCCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCACACTCGAGTGATTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGTGCTCCGCACCACACCAGCTCCGCCATCTCATTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCCTGTGGAGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCAAAACTCCCGCCAGGCGCCTTGACTTCAGATGCG
GCGCAGGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAACTACAACTCAGCCGCGCCGGCGTACT
CAATAGCCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGACGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTTTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

100

0.435

Multiple sequence alignment