Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5626_RS19325 Genome accession   NZ_AP024610
Coordinates   4370434..4371954 (+) Length   506 a.a.
NCBI ID   WP_025889653.1    Uniprot ID   -
Organism   Shewanella algae strain TUM4442     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4365434..4376954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5626_RS19300 (TUM4442_37930) - 4366295..4367371 (-) 1077 WP_157771181.1 ABC transporter substrate-binding protein -
  K5626_RS19305 (TUM4442_37940) - 4367453..4367701 (-) 249 WP_025010076.1 hypothetical protein -
  K5626_RS19310 (TUM4442_37950) - 4367857..4368672 (-) 816 WP_096142467.1 EAL domain-containing protein -
  K5626_RS19315 (TUM4442_37960) - 4368991..4369788 (+) 798 WP_221052412.1 winged helix-turn-helix domain-containing protein -
  K5626_RS19320 (TUM4442_37970) - 4369776..4370276 (+) 501 WP_221052413.1 hypothetical protein -
  K5626_RS19325 (TUM4442_37980) comM 4370434..4371954 (+) 1521 WP_025889653.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5626_RS19330 (TUM4442_37990) - 4372054..4372950 (+) 897 WP_107006343.1 LysR substrate-binding domain-containing protein -
  K5626_RS19335 (TUM4442_38000) phnX 4373053..4373862 (-) 810 WP_054744203.1 phosphonoacetaldehyde hydrolase -
  K5626_RS19340 (TUM4442_38010) - 4373850..4374977 (-) 1128 WP_054744202.1 phosphonoacetaldehyde reductase -
  K5626_RS19345 (TUM4442_38020) phnE 4374996..4375799 (-) 804 WP_045283250.1 phosphonate ABC transporter, permease protein PhnE -
  K5626_RS19350 (TUM4442_38030) phnC 4375793..4376620 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54441.90 Da        Isoelectric Point: 8.7098

>NTDB_id=86519 K5626_RS19325 WP_025889653.1 4370434..4371954(+) (comM) [Shewanella algae strain TUM4442]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=86519 K5626_RS19325 WP_025889653.1 4370434..4371954(+) (comM) [Shewanella algae strain TUM4442]
ATGCCCATAGCCAGAGTTGCTACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCACACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCAGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTAATTATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCATGGACAGCAAACTCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCGCACTCGAGTGACTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCGGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCCTGTGGTGATGCCGGCCCGGGAAGCCGTGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAGGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTCGCTGCGGCCAGGGAACTACAACTCAGCCGCGCCGGCGTACT
CAATAGCCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCACGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAAGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment