Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q7586_RS21980 Genome accession   NZ_CP131791
Coordinates   4702913..4703785 (-) Length   290 a.a.
NCBI ID   WP_033944809.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2014S05-249     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4697913..4708785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7586_RS21935 (Q7586_21940) - 4698774..4698944 (-) 171 WP_003094672.1 DUF3094 family protein -
  Q7586_RS21940 (Q7586_21945) - 4698970..4699419 (-) 450 WP_003094670.1 MOSC domain-containing protein -
  Q7586_RS21945 (Q7586_21950) - 4699416..4700045 (-) 630 WP_003094668.1 DUF1780 domain-containing protein -
  Q7586_RS21950 (Q7586_21955) - 4700178..4700603 (+) 426 WP_016562341.1 GNAT family N-acetyltransferase -
  Q7586_RS21955 (Q7586_21960) - 4700600..4701070 (+) 471 WP_003094664.1 hypothetical protein -
  Q7586_RS21960 (Q7586_21965) - 4701067..4701756 (+) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  Q7586_RS21965 (Q7586_21970) - 4701862..4702071 (+) 210 WP_003094660.1 hypothetical protein -
  Q7586_RS21970 (Q7586_21975) yacG 4702108..4702308 (-) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  Q7586_RS21975 (Q7586_21980) coaE 4702305..4702916 (-) 612 WP_003112838.1 dephospho-CoA kinase -
  Q7586_RS21980 (Q7586_21985) pilD 4702913..4703785 (-) 873 WP_033944809.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  Q7586_RS21985 (Q7586_21990) pilC 4703788..4705005 (-) 1218 WP_033944807.1 type II secretion system F family protein Machinery gene
  Q7586_RS21990 (Q7586_21995) pilB 4705009..4706712 (-) 1704 WP_033944805.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q7586_RS21995 (Q7586_22000) pilE 4706939..4707475 (+) 537 WP_025921208.1 pilin Machinery gene
  Q7586_RS22000 (Q7586_22005) tfpZ 4707540..4708277 (+) 738 WP_023100229.1 TfpX/TfpZ family type IV pilin accessory protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31812.78 Da        Isoelectric Point: 7.3860

>NTDB_id=865181 Q7586_RS21980 WP_033944809.1 4702913..4703785(-) (pilD) [Pseudomonas aeruginosa strain 2014S05-249]
MQLTDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=865181 Q7586_RS21980 WP_033944809.1 4702913..4703785(-) (pilD) [Pseudomonas aeruginosa strain 2014S05-249]
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.071

96.552

0.541
  pilD Vibrio campbellii strain DS40M4

53.191

97.241

0.517
  pilD Acinetobacter nosocomialis M2

51.071

96.552

0.493
  pilD Acinetobacter baumannii D1279779

51.071

96.552

0.493
  pilD Neisseria gonorrhoeae MS11

48.929

96.552

0.472