Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q7591_RS31120 Genome accession   NZ_CP131783
Coordinates   6534961..6536454 (+) Length   497 a.a.
NCBI ID   WP_034013664.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2016C02-074     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 6529961..6541454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7591_RS31090 (Q7591_31090) - 6530095..6531009 (-) 915 WP_003163071.1 fimbrial protein -
  Q7591_RS31095 (Q7591_31095) sutA 6531433..6531750 (-) 318 WP_003098240.1 transcriptional regulator SutA -
  Q7591_RS31100 (Q7591_31100) - 6531828..6532253 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  Q7591_RS31105 (Q7591_31105) - 6532514..6533842 (-) 1329 WP_023092758.1 ammonium transporter -
  Q7591_RS31110 (Q7591_31110) glnK 6533882..6534220 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  Q7591_RS31115 (Q7591_31115) - 6534660..6534920 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  Q7591_RS31120 (Q7591_31120) comM 6534961..6536454 (+) 1494 WP_034013664.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q7591_RS31125 (Q7591_31125) betT 6536579..6538564 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  Q7591_RS31130 (Q7591_31130) pchP 6538607..6539656 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  Q7591_RS31135 (Q7591_31135) - 6539807..6540724 (-) 918 WP_034013663.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53125.01 Da        Isoelectric Point: 7.7576

>NTDB_id=865015 Q7591_RS31120 WP_034013664.1 6534961..6536454(+) (comM) [Pseudomonas aeruginosa strain 2016C02-074]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPEHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=865015 Q7591_RS31120 WP_034013664.1 6534961..6536454(+) (comM) [Pseudomonas aeruginosa strain 2016C02-074]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTACTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGCGGCTACCTGGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGAACACGGCGAA
ACCGCTACTGCCGAGGTCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.206

100

0.565
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Vibrio cholerae strain A1552

56.048

99.799

0.559
  comM Glaesserella parasuis strain SC1401

54.563

100

0.553
  comM Legionella pneumophila str. Paris

50.1

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.1

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.957

100

0.469