Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q7612_RS09685 Genome accession   NZ_CP131722
Coordinates   1921717..1923246 (+) Length   509 a.a.
NCBI ID   WP_032824634.1    Uniprot ID   A0A0D0H0P9
Organism   Haemophilus influenzae strain 2018C09-260     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1916717..1928246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7612_RS09660 (Q7612_09640) oppC 1917064..1917999 (+) 936 WP_005651799.1 oligopeptide ABC transporter permease OppC -
  Q7612_RS09665 (Q7612_09645) - 1918009..1918980 (+) 972 WP_005670792.1 ABC transporter ATP-binding protein -
  Q7612_RS09670 (Q7612_09650) oppF 1918977..1919975 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  Q7612_RS09675 (Q7612_09655) - 1920015..1920881 (-) 867 WP_032824635.1 VirK/YbjX family protein -
  Q7612_RS09680 (Q7612_09660) yihA 1920985..1921602 (+) 618 WP_048954758.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  Q7612_RS09685 (Q7612_09665) comM 1921717..1923246 (+) 1530 WP_032824634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q7612_RS09690 (Q7612_09670) deoC 1923279..1923950 (-) 672 WP_065245196.1 deoxyribose-phosphate aldolase -
  Q7612_RS09695 (Q7612_09675) - 1924060..1924563 (+) 504 WP_005651783.1 protein disulfide oxidoreductase -
  Q7612_RS09700 (Q7612_09680) rfaD 1924616..1925542 (+) 927 WP_012055407.1 ADP-glyceromanno-heptose 6-epimerase -
  Q7612_RS09705 (Q7612_09685) xylB 1925593..1927074 (-) 1482 WP_342122914.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55890.40 Da        Isoelectric Point: 9.8668

>NTDB_id=864771 Q7612_RS09685 WP_032824634.1 1921717..1923246(+) (comM) [Haemophilus influenzae strain 2018C09-260]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=864771 Q7612_RS09685 WP_032824634.1 1921717..1923246(+) (comM) [Haemophilus influenzae strain 2018C09-260]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCGCCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTAAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGTGGGCGA
TTTGATTTGCCTATTGCTATCGGAATTTTAGCTGCATCGGATCAGCTTGATGCAAGCCGTTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGACAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCACAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCACAAACGCTT
TTAGATGTAGTGCAATTTCTCAACGGTCAGGAAAAATTACCACTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCCCCGCATCATAGTGCATCAATGCCTGCTTTAGTTGGTGGCGGGACAATCCCTAAACCTGGCG
AAATATCCTTAGCCACAAATGGGGTACTGTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTGTTAGATGCGCTACGC
CAGCCTTTGGAAAGTGGCGAGATTATTATTTCTCGTGCCAATGCCAAAATTCAATTTCCAGCTCGTTTTCAATTAGTCGC
AGCGATGAATCCAAGCCCCACAGGTCATTATACTGGAACACATAACCGCACTTCACCCCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCCTTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCAGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGAGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATAGAGCAATGGATCGTTTGCTGCAGAAATTATC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0H0P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.411

100

0.994
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475