Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q7612_RS03120 Genome accession   NZ_CP131722
Coordinates   627326..628123 (+) Length   265 a.a.
NCBI ID   WP_005649306.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C09-260     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622326..633123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7612_RS03100 (Q7612_03095) recR 622500..623102 (-) 603 WP_005626527.1 recombination mediator RecR -
  Q7612_RS03105 (Q7612_03100) - 623233..623562 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  Q7612_RS03110 (Q7612_03105) - 623715..624560 (-) 846 WP_005666516.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Q7612_RS03115 (Q7612_03110) - 624633..627227 (-) 2595 WP_342123008.1 penicillin-binding protein 1A -
  Q7612_RS03120 (Q7612_03115) comA 627326..628123 (+) 798 WP_005649306.1 pilus assembly protein PilM Machinery gene
  Q7612_RS03125 (Q7612_03120) comB 628124..628630 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  Q7612_RS03130 (Q7612_03125) comC 628627..629148 (+) 522 WP_005649304.1 competence protein ComC Machinery gene
  Q7612_RS03135 (Q7612_03130) comD 629145..629558 (+) 414 WP_126513465.1 pilus assembly protein PilP Machinery gene
  Q7612_RS03140 (Q7612_03135) comE 629568..630905 (+) 1338 WP_126513466.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7612_RS03145 (Q7612_03140) - 630918..631604 (+) 687 WP_126513467.1 ComF family protein -
  Q7612_RS03150 (Q7612_03145) nfuA 631680..632276 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31541.90 Da        Isoelectric Point: 5.9495

>NTDB_id=864750 Q7612_RS03120 WP_005649306.1 627326..628123(+) (comA) [Haemophilus influenzae strain 2018C09-260]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRQSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=864750 Q7612_RS03120 WP_005649306.1 627326..628123(+) (comA) [Haemophilus influenzae strain 2018C09-260]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAGCAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTCAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

97.736

100

0.977
  comA Haemophilus influenzae 86-028NP

96.981

100

0.97