Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   Q7616_RS03135 Genome accession   NZ_CP131717
Coordinates   623322..623735 (+) Length   137 a.a.
NCBI ID   WP_021034381.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 618322..628735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS03115 (Q7616_03120) - 618810..621404 (-) 2595 WP_118806713.1 penicillin-binding protein 1A -
  Q7616_RS03120 (Q7616_03125) comA 621503..622300 (+) 798 WP_342120400.1 competence protein ComA Machinery gene
  Q7616_RS03125 (Q7616_03130) comB 622301..622807 (+) 507 WP_105873321.1 competence protein B Machinery gene
  Q7616_RS03130 (Q7616_03135) comC 622804..623325 (+) 522 WP_342120401.1 competence protein ComC Machinery gene
  Q7616_RS03135 (Q7616_03140) comD 623322..623735 (+) 414 WP_021034381.1 pilus assembly protein PilP Machinery gene
  Q7616_RS03140 (Q7616_03145) comE 623745..625085 (+) 1341 WP_342120402.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7616_RS03145 (Q7616_03150) - 625098..625784 (+) 687 WP_005669238.1 ComF family protein -
  Q7616_RS03150 (Q7616_03155) nfuA 625860..626456 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  Q7616_RS03155 (Q7616_03160) nudC 626523..627317 (+) 795 WP_014550416.1 NAD(+) diphosphatase -
  Q7616_RS03160 (Q7616_03165) - 627353..627943 (+) 591 WP_005656455.1 YjaG family protein -
  Q7616_RS03165 (Q7616_03170) - 628083..628355 (+) 273 WP_014550417.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15658.77 Da        Isoelectric Point: 4.3509

>NTDB_id=864610 Q7616_RS03135 WP_021034381.1 623322..623735(+) (comD) [Haemophilus influenzae strain 2016N21-284]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLLDQNLQIYSVLEGVDVAQEGYIVEKIDQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=864610 Q7616_RS03135 WP_021034381.1 623322..623735(+) (comD) [Haemophilus influenzae strain 2016N21-284]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAACG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCCTTGAATGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCGTTATTGCTGGATCAGAATTTGCAAATTTACAGCGTTTTAGAGGGTGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCGACCAAAACAATGTTCAATTTATGCGCAAGCTCGGGGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae 86-028NP

94.161

100

0.942
  comD Haemophilus influenzae Rd KW20

93.431

100

0.934