Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q7616_RS03120 Genome accession   NZ_CP131717
Coordinates   621503..622300 (+) Length   265 a.a.
NCBI ID   WP_342120400.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 616503..627300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS03100 (Q7616_03105) recR 616669..617271 (-) 603 WP_005626527.1 recombination mediator RecR -
  Q7616_RS03105 (Q7616_03110) - 617404..617733 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  Q7616_RS03110 (Q7616_03115) - 617892..618737 (-) 846 WP_005656472.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Q7616_RS03115 (Q7616_03120) - 618810..621404 (-) 2595 WP_118806713.1 penicillin-binding protein 1A -
  Q7616_RS03120 (Q7616_03125) comA 621503..622300 (+) 798 WP_342120400.1 competence protein ComA Machinery gene
  Q7616_RS03125 (Q7616_03130) comB 622301..622807 (+) 507 WP_105873321.1 competence protein B Machinery gene
  Q7616_RS03130 (Q7616_03135) comC 622804..623325 (+) 522 WP_342120401.1 competence protein ComC Machinery gene
  Q7616_RS03135 (Q7616_03140) comD 623322..623735 (+) 414 WP_021034381.1 pilus assembly protein PilP Machinery gene
  Q7616_RS03140 (Q7616_03145) comE 623745..625085 (+) 1341 WP_342120402.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7616_RS03145 (Q7616_03150) - 625098..625784 (+) 687 WP_005669238.1 ComF family protein -
  Q7616_RS03150 (Q7616_03155) nfuA 625860..626456 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31676.08 Da        Isoelectric Point: 6.2347

>NTDB_id=864607 Q7616_RS03120 WP_342120400.1 621503..622300(+) (comA) [Haemophilus influenzae strain 2016N21-284]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPEHWQRV
ETELPFIALGNALWQKDLYQQKVGN

Nucleotide


Download         Length: 798 bp        

>NTDB_id=864607 Q7616_RS03120 WP_342120400.1 621503..622300(+) (comA) [Haemophilus influenzae strain 2016N21-284]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAGCAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCACAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTGTTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
TTGTGAAAGATCGCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTGTATCAAATTCCCTCAAGTCATACGCCATTACCAGAACACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTGGGCAACGCGCTATGGCAAAAAGATTTATATCAACAAAAAGTAGGTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

97.358

100

0.974
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966