Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WHO32_RS08255 Genome accession   NZ_CP148112
Coordinates   1568013..1568462 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563013..1573462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS08215 ctaE 1563030..1563653 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  WHO32_RS08220 ctaF 1563656..1563988 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  WHO32_RS08225 ctaG 1564015..1564908 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  WHO32_RS08230 ylbA 1564940..1565302 (-) 363 WP_003232238.1 YugN family protein -
  WHO32_RS08235 ylbB 1565442..1565888 (+) 447 WP_003221362.1 CBS domain-containing protein -
  WHO32_RS08240 ylbC 1565972..1567012 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  WHO32_RS08245 ylbD 1567244..1567642 (+) 399 WP_003232233.1 YlbD family protein -
  WHO32_RS08250 ylbE 1567658..1567897 (+) 240 WP_003232231.1 YlbE-like family protein -
  WHO32_RS08255 ylbF 1568013..1568462 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WHO32_RS08260 ylbG 1568517..1568789 (+) 273 WP_009967171.1 YlbG family protein -
  WHO32_RS08265 rsmD 1569112..1569666 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WHO32_RS08270 coaD 1569671..1570156 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WHO32_RS08275 spoVV 1570167..1571393 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  WHO32_RS08280 ylbK 1571574..1572356 (+) 783 WP_003232221.1 patatin family protein -
  WHO32_RS08285 sepM 1572358..1573383 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=864607 WHO32_RS08255 WP_003221370.1 1568013..1568462(+) (ylbF) [Bacillus subtilis isolate FELIX_MS504]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=864607 WHO32_RS08255 WP_003221370.1 1568013..1568462(+) (ylbF) [Bacillus subtilis isolate FELIX_MS504]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1