Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   Q7616_RS03125 Genome accession   NZ_CP131717
Coordinates   622301..622807 (+) Length   168 a.a.
NCBI ID   WP_105873321.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 617301..627807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS03105 (Q7616_03110) - 617404..617733 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  Q7616_RS03110 (Q7616_03115) - 617892..618737 (-) 846 WP_005656472.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Q7616_RS03115 (Q7616_03120) - 618810..621404 (-) 2595 WP_118806713.1 penicillin-binding protein 1A -
  Q7616_RS03120 (Q7616_03125) comA 621503..622300 (+) 798 WP_342120400.1 competence protein ComA Machinery gene
  Q7616_RS03125 (Q7616_03130) comB 622301..622807 (+) 507 WP_105873321.1 competence protein B Machinery gene
  Q7616_RS03130 (Q7616_03135) comC 622804..623325 (+) 522 WP_342120401.1 competence protein ComC Machinery gene
  Q7616_RS03135 (Q7616_03140) comD 623322..623735 (+) 414 WP_021034381.1 pilus assembly protein PilP Machinery gene
  Q7616_RS03140 (Q7616_03145) comE 623745..625085 (+) 1341 WP_342120402.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7616_RS03145 (Q7616_03150) - 625098..625784 (+) 687 WP_005669238.1 ComF family protein -
  Q7616_RS03150 (Q7616_03155) nfuA 625860..626456 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  Q7616_RS03155 (Q7616_03160) nudC 626523..627317 (+) 795 WP_014550416.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19833.75 Da        Isoelectric Point: 8.5622

>NTDB_id=864608 Q7616_RS03125 WP_105873321.1 622301..622807(+) (comB) [Haemophilus influenzae strain 2016N21-284]
MSMNLLPWRTYQHQNRLRRLAFYIALFILLAINLTLAFSNLIEQQKQDLQAQQTSFEKLNQQLHKTTKQIEQLRSTVQVG
EILTSIPKEQVKKSLQLLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=864608 Q7616_RS03125 WP_105873321.1 622301..622807(+) (comB) [Haemophilus influenzae strain 2016N21-284]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAACCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAACTTTGGCTTTTAGTAATTTAATTGAACAACAAAAACAAGATCTGCAAGCACAGCAAA
CATCTTTTGAAAAACTTAATCAGCAACTTCATAAAACAACCAAGCAAATTGAACAGTTGCGTAGTACAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCTGCTAAGTGAATTACCTTTTCAGCAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGAGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

91.071

100

0.911
  comB Haemophilus influenzae Rd KW20

89.881

100

0.899